To ensure the reliable use of classification systems in medical applications, it is crucial to prevent silent failures. This can be achieved by either designing classifiers that are robust enough to avoid failures in the first place, or by detecting remaining failures using confidence scoring functions (CSFs). A predominant source of failures in image classification is distribution shifts between training data and deployment data. To understand the current state of silent failure prevention in medical imaging, we conduct the first comprehensive analysis comparing various CSFs in four biomedical tasks and a diverse range of distribution shifts. Based on the result that none of the benchmarked CSFs can reliably prevent silent failures, we conclude that a deeper understanding of the root causes of failures in the data is required. To facilitate this, we introduce SF-Visuals, an interactive analysis tool that uses latent space clustering to visualize shifts and failures. On the basis of various examples, we demonstrate how this tool can help researchers gain insight into the requirements for safe application of classification systems in the medical domain. The open-source benchmark and tool are at: https://github.com/IML-DKFZ/sf-visuals.
Many studies have proposed machine-learning (ML) models for malware detection and classification, reporting an almost-perfect performance. However, they assemble ground-truth in different ways, use diverse static- and dynamic-analysis techniques for feature extraction, and even differ on what they consider a malware family. As a consequence, our community still lacks an understanding of malware classification results: whether they are tied to the nature and distribution of the collected dataset, to what extent the number of families and samples in the training dataset influence performance, and how well static and dynamic features complement each other. This work sheds light on those open questions. by investigating the key factors influencing ML-based malware detection and classification. For this, we collect the largest balanced malware dataset so far with 67K samples from 670 families (100 samples each), and train state-of-the-art models for malware detection and family classification using our dataset. Our results reveal that static features perform better than dynamic features, and that combining both only provides marginal improvement over static features. We discover no correlation between packing and classification accuracy, and that missing behaviors in dynamically-extracted features highly penalize their performance. We also demonstrate how a larger number of families to classify make the classification harder, while a higher number of samples per family increases accuracy. Finally, we find that models trained on a uniform distribution of samples per family better generalize on unseen data.
The recent surge of foundation models in computer vision and natural language processing opens up perspectives in utilizing multi-modal clinical data to train large models with strong generalizability. Yet pathological image datasets often lack biomedical text annotation and enrichment. Guiding data-efficient image diagnosis from the use of biomedical text knowledge becomes a substantial interest. In this paper, we propose to Connect Image and Text Embeddings (CITE) to enhance pathological image classification. CITE injects text insights gained from language models pre-trained with a broad range of biomedical texts, leading to adapt foundation models towards pathological image understanding. Through extensive experiments on the PatchGastric stomach tumor pathological image dataset, we demonstrate that CITE achieves leading performance compared with various baselines especially when training data is scarce. CITE offers insights into leveraging in-domain text knowledge to reinforce data-efficient pathological image classification. Code is available at https://github.com/Yunkun-Zhang/CITE.
Self-supervised learning is popular method because of its ability to learn features in images without using its labels and is able to overcome limited labeled datasets used in supervised learning. Self-supervised learning works by using a pretext task which will be trained on the model before being applied to a specific task. There are some examples of pretext tasks used in self-supervised learning in the field of image recognition, namely rotation prediction, solving jigsaw puzzles, and predicting relative positions on image. Previous studies have only used one type of transformation as a pretext task. This raises the question of how it affects if more than one pretext task is used and to use a gating network to combine all pretext tasks. Therefore, we propose the Gated Self-Supervised Learning method to improve image classification which use more than one transformation as pretext task and uses the Mixture of Expert architecture as a gating network in combining each pretext task so that the model automatically can study and focus more on the most useful augmentations for classification. We test performance of the proposed method in several scenarios, namely CIFAR imbalance dataset classification, adversarial perturbations, Tiny-Imagenet dataset classification, and semi-supervised learning. Moreover, there are Grad-CAM and T-SNE analysis that are used to see the proposed method for identifying important features that influence image classification and representing data for each class and separating different classes properly. Our code is in https://github.com/aristorenaldo/G-SSL
In our study, we introduce a novel hybrid ensemble model that synergistically combines LSTM, BiLSTM, CNN, GRU, and GloVe embeddings for the classification of gene mutations in cancer. This model was rigorously tested using Kaggle's Personalized Medicine: Redefining Cancer Treatment dataset, demonstrating exceptional performance across all evaluation metrics. Notably, our approach achieved a training accuracy of 80.6%, precision of 81.6%, recall of 80.6%, and an F1 score of 83.1%, alongside a significantly reduced Mean Squared Error (MSE) of 2.596. These results surpass those of advanced transformer models and their ensembles, showcasing our model's superior capability in handling the complexities of gene mutation classification. The accuracy and efficiency of gene mutation classification are paramount in the era of precision medicine, where tailored treatment plans based on individual genetic profiles can dramatically improve patient outcomes and save lives. Our model's remarkable performance highlights its potential in enhancing the precision of cancer diagnoses and treatments, thereby contributing significantly to the advancement of personalized healthcare.
This study introduces and evaluates tiny, mini, small, and medium-sized uncased Turkish BERT models, aiming to bridge the research gap in less-resourced languages. We trained these models on a diverse dataset encompassing over 75GB of text from multiple sources and tested them on several tasks, including mask prediction, sentiment analysis, news classification, and, zero-shot classification. Despite their smaller size, our models exhibited robust performance, including zero-shot task, while ensuring computational efficiency and faster execution times. Our findings provide valuable insights into the development and application of smaller language models, especially in the context of the Turkish language.
The missing modality issue is critical but non-trivial to be solved by multi-modal models. Current methods aiming to handle the missing modality problem in multi-modal tasks, either deal with missing modalities only during evaluation or train separate models to handle specific missing modality settings. In addition, these models are designed for specific tasks, so for example, classification models are not easily adapted to segmentation tasks and vice versa. In this paper, we propose the Shared-Specific Feature Modelling (ShaSpec) method that is considerably simpler and more effective than competing approaches that address the issues above. ShaSpec is designed to take advantage of all available input modalities during training and evaluation by learning shared and specific features to better represent the input data. This is achieved from a strategy that relies on auxiliary tasks based on distribution alignment and domain classification, in addition to a residual feature fusion procedure. Also, the design simplicity of ShaSpec enables its easy adaptation to multiple tasks, such as classification and segmentation. Experiments are conducted on both medical image segmentation and computer vision classification, with results indicating that ShaSpec outperforms competing methods by a large margin. For instance, on BraTS2018, ShaSpec improves the SOTA by more than 3% for enhancing tumour, 5% for tumour core and 3% for whole tumour. The code repository address is https://github.com/billhhh/ShaSpec/.
Image recognition has recently witnessed a paradigm shift, where vision-language models are now used to perform few-shot classification based on textual prompts. Among these, the CLIP model has shown remarkable capabilities for zero-shot transfer by matching an image and a custom textual prompt in its latent space. This has paved the way for several works that focus on engineering or learning textual contexts for maximizing CLIP's classification capabilities. In this paper, we follow this trend by learning an ensemble of prompts for image classification. We show that learning diverse and possibly shorter contexts improves considerably and consistently the results rather than relying on a single trainable prompt. In particular, we report better few-shot capabilities with no additional cost at inference time. We demonstrate the capabilities of our approach on 11 different benchmarks.
Despite the presence of the classification task in many different benchmark datasets for perception in the automotive domain, few efforts have been undertaken to define consistent classification requirements. This work addresses the topic by proposing a structured method to generate a classification structure. First, legal categories are identified based on behavioral requirements for the vehicle. This structure is further substantiated by considering the two aspects of collision safety for objects as well as perceptual categories. A classification hierarchy is obtained by applying the method to an exemplary legal text. A comparison of the results with benchmark dataset categories shows limited agreement. This indicates the necessity for explicit consideration of legal requirements regarding perception.
Network traffic monitoring using IP flows is used to handle the current challenge of analyzing encrypted network communication. Nevertheless, the packet aggregation into flow records naturally causes information loss; therefore, this paper proposes a novel flow extension for traffic features based on the time series analysis of the Single Flow Time series, i.e., a time series created by the number of bytes in each packet and its timestamp. We propose 69 universal features based on the statistical analysis of data points, time domain analysis, packet distribution within the flow timespan, time series behavior, and frequency domain analysis. We have demonstrated the usability and universality of the proposed feature vector for various network traffic classification tasks using 15 well-known publicly available datasets. Our evaluation shows that the novel feature vector achieves classification performance similar or better than related works on both binary and multiclass classification tasks. In more than half of the evaluated tasks, the classification performance increased by up to 5\%.
For safety-related applications, it is crucial to produce trustworthy deep neural networks whose prediction is associated with confidence that can represent the likelihood of correctness for subsequent decision-making. Existing dense binary classification models are prone to being over-confident. To improve model calibration, we propose Adaptive Stochastic Label Perturbation (ASLP) which learns a unique label perturbation level for each training image. ASLP employs our proposed Self-Calibrating Binary Cross Entropy (SC-BCE) loss, which unifies label perturbation processes including stochastic approaches (like DisturbLabel), and label smoothing, to correct calibration while maintaining classification rates. ASLP follows Maximum Entropy Inference of classic statistical mechanics to maximise prediction entropy with respect to missing information. It performs this while: (1) preserving classification accuracy on known data as a conservative solution, or (2) specifically improves model calibration degree by minimising the gap between the prediction accuracy and expected confidence of the target training label. Extensive results demonstrate that ASLP can significantly improve calibration degrees of dense binary classification models on both in-distribution and out-of-distribution data. The code is available on https://github.com/Carlisle-Liu/ASLP.
Anomaly segmentation is a critical task for driving applications, and it is approached traditionally as a per-pixel classification problem. However, reasoning individually about each pixel without considering their contextual semantics results in high uncertainty around the objects' boundaries and numerous false positives. We propose a paradigm change by shifting from a per-pixel classification to a mask classification. Our mask-based method, Mask2Anomaly, demonstrates the feasibility of integrating an anomaly detection method in a mask-classification architecture. Mask2Anomaly includes several technical novelties that are designed to improve the detection of anomalies in masks: i) a global masked attention module to focus individually on the foreground and background regions; ii) a mask contrastive learning that maximizes the margin between an anomaly and known classes; and iii) a mask refinement solution to reduce false positives. Mask2Anomaly achieves new state-of-the-art results across a range of benchmarks, both in the per-pixel and component-level evaluations. In particular, Mask2Anomaly reduces the average false positives rate by 60% wrt the previous state-of-the-art. Github page: https://github.com/shyam671/Mask2Anomaly-Unmasking-Anomalies-in-Road-Scene-Segmentation.
In this research work, a comparative analysis was carried out using classification methods such as: Discriminant Analysis and Logistic Regression to subsequently predict whether a person may have the presence of early stage diabetes. For this purpose, use was made of a database of the UC IRVINE platform of the year 2020 where specific variables that influence diabetes were used for a better result. Likewise in terms of methodology, the corresponding analysis was performed for each of the 3 classification methods and then take them to a comparative table and analyze the results obtained. Finally we can add that the majority of the studies carried out applying the classification methods to the diseases can be clearly seen that there is a certain attachment and more use of the logistic regression classification method, on the other hand, in the results we could see significant differences in terms of the 2 classification methods that were applied, which was valuable information for later drawing final conclusions.
Deep learning models have become popular in the analysis of tabular data, as they address the limitations of decision trees and enable valuable applications like semi-supervised learning, online learning, and transfer learning. However, these deep-learning approaches often encounter a trade-off. On one hand, they can be computationally expensive when dealing with large-scale or high-dimensional datasets. On the other hand, they may lack interpretability and may not be suitable for small-scale datasets. In this study, we propose a novel interpretable neural network called Neural Classification and Regression Tree (NCART) to overcome these challenges. NCART is a modified version of Residual Networks that replaces fully-connected layers with multiple differentiable oblivious decision trees. By integrating decision trees into the architecture, NCART maintains its interpretability while benefiting from the end-to-end capabilities of neural networks. The simplicity of the NCART architecture makes it well-suited for datasets of varying sizes and reduces computational costs compared to state-of-the-art deep learning models. Extensive numerical experiments demonstrate the superior performance of NCART compared to existing deep learning models, establishing it as a strong competitor to tree-based models.
Misinformation on YouTube is a significant concern, necessitating robust detection strategies. In this paper, we introduce a novel methodology for video classification, focusing on the veracity of the content. We convert the conventional video classification task into a text classification task by leveraging the textual content derived from the video transcripts. We employ advanced machine learning techniques like transfer learning to solve the classification challenge. Our approach incorporates two forms of transfer learning: (a) fine-tuning base transformer models such as BERT, RoBERTa, and ELECTRA, and (b) few-shot learning using sentence-transformers MPNet and RoBERTa-large. We apply the trained models to three datasets: (a) YouTube Vaccine-misinformation related videos, (b) YouTube Pseudoscience videos, and (c) Fake-News dataset (a collection of articles). Including the Fake-News dataset extended the evaluation of our approach beyond YouTube videos. Using these datasets, we evaluated the models distinguishing valid information from misinformation. The fine-tuned models yielded Matthews Correlation Coefficient>0.81, accuracy>0.90, and F1 score>0.90 in two of three datasets. Interestingly, the few-shot models outperformed the fine-tuned ones by 20% in both Accuracy and F1 score for the YouTube Pseudoscience dataset, highlighting the potential utility of this approach -- especially in the context of limited training data.
We investigate the problem of Object State Classification (OSC) as a zero-shot learning problem. Specifically, we propose the first Object-agnostic State Classification (OaSC) method that infers the state of a certain object without relying on the knowledge or the estimation of the object class. In that direction, we capitalize on Knowledge Graphs (KGs) for structuring and organizing knowledge, which, in combination with visual information, enable the inference of the states of objects in object/state pairs that have not been encountered in the method's training set. A series of experiments investigate the performance of the proposed method in various settings, against several hypotheses and in comparison with state of the art approaches for object attribute classification. The experimental results demonstrate that the knowledge of an object class is not decisive for the prediction of its state. Moreover, the proposed OaSC method outperforms existing methods in all datasets and benchmarks by a great margin.
Scene recognition based on deep-learning has made significant progress, but there are still limitations in its performance due to challenges posed by inter-class similarities and intra-class dissimilarities. Furthermore, prior research has primarily focused on improving classification accuracy, yet it has given less attention to achieving interpretable, precise scene classification. Therefore, we are motivated to propose EnTri, an ensemble scene recognition framework that employs ensemble learning using a hierarchy of visual features. EnTri represents features at three distinct levels of detail: pixel-level, semantic segmentation-level, and object class and frequency level. By incorporating distinct feature encoding schemes of differing complexity and leveraging ensemble strategies, our approach aims to improve classification accuracy while enhancing transparency and interpretability via visual and textual explanations. To achieve interpretability, we devised an extension algorithm that generates both visual and textual explanations highlighting various properties of a given scene that contribute to the final prediction of its category. This includes information about objects, statistics, spatial layout, and textural details. Through experiments on benchmark scene classification datasets, EnTri has demonstrated superiority in terms of recognition accuracy, achieving competitive performance compared to state-of-the-art approaches, with an accuracy of 87.69%, 75.56%, and 99.17% on the MIT67, SUN397, and UIUC8 datasets, respectively.
There are two fundamental problems in applying deep learning/machine learning methods to disease classification tasks, one is the insufficient number and poor quality of training samples; another one is how to effectively fuse multiple source features and thus train robust classification models. To address these problems, inspired by the process of human learning knowledge, we propose the Feature-aware Fusion Correlation Neural Network (FaFCNN), which introduces a feature-aware interaction module and a feature alignment module based on domain adversarial learning. This is a general framework for disease classification, and FaFCNN improves the way existing methods obtain sample correlation features. The experimental results show that training using augmented features obtained by pre-training gradient boosting decision tree yields more performance gains than random-forest based methods. On the low-quality dataset with a large amount of missing data in our setup, FaFCNN obtains a consistently optimal performance compared to competitive baselines. In addition, extensive experiments demonstrate the robustness of the proposed method and the effectiveness of each component of the model\footnote{Accepted in IEEE SMC2023}.
Recent vision-language models outperform vision-only models on many image classification tasks. However, because of the absence of paired text/image descriptions, it remains difficult to fine-tune these models for fine-grained image classification. In this work, we propose a method, GIST, for generating image-specific fine-grained text descriptions from image-only datasets, and show that these text descriptions can be used to improve classification. Key parts of our method include 1. prompting a pretrained large language model with domain-specific prompts to generate diverse fine-grained text descriptions for each class and 2. using a pretrained vision-language model to match each image to label-preserving text descriptions that capture relevant visual features in the image. We demonstrate the utility of GIST by fine-tuning vision-language models on the image-and-generated-text pairs to learn an aligned vision-language representation space for improved classification. We evaluate our learned representation space in full-shot and few-shot scenarios across four diverse fine-grained classification datasets, each from a different domain. Our method achieves an average improvement of $4.1\%$ in accuracy over CLIP linear probes and an average of $1.1\%$ improvement in accuracy over the previous state-of-the-art image-text classification method on the full-shot datasets. Our method achieves similar improvements across few-shot regimes. Code is available at https://github.com/emu1729/GIST.
Functional magnetic resonance imaging (fMRI) is a commonly used technique to measure neural activation. Its application has been particularly important in identifying underlying neurodegenerative conditions such as Parkinson's, Alzheimer's, and Autism. Recent analysis of fMRI data models the brain as a graph and extracts features by graph neural networks (GNNs). However, the unique characteristics of fMRI data require a special design of GNN. Tailoring GNN to generate effective and domain-explainable features remains challenging. In this paper, we propose a contrastive dual-attention block and a differentiable graph pooling method called ContrastPool to better utilize GNN for brain networks, meeting fMRI-specific requirements. We apply our method to 5 resting-state fMRI brain network datasets of 3 diseases and demonstrate its superiority over state-of-the-art baselines. Our case study confirms that the patterns extracted by our method match the domain knowledge in neuroscience literature, and disclose direct and interesting insights. Our contributions underscore the potential of ContrastPool for advancing the understanding of brain networks and neurodegenerative conditions. The source code is available at https://github.com/AngusMonroe/ContrastPool.