Much of the excitement in modern AI is driven by the observation that scaling up existing systems leads to better performance. But does better performance necessarily imply better internal representations? While the representational optimist assumes it must, this position paper challenges that view. We compare neural networks evolved through an open-ended search process to networks trained via conventional stochastic gradient descent (SGD) on the simple task of generating a single image. This minimal setup offers a unique advantage: each hidden neuron's full functional behavior can be easily visualized as an image, thus revealing how the network's output behavior is internally constructed neuron by neuron. The result is striking: while both networks produce the same output behavior, their internal representations differ dramatically. The SGD-trained networks exhibit a form of disorganization that we term fractured entangled representation (FER). Interestingly, the evolved networks largely lack FER, even approaching a unified factored representation (UFR). In large models, FER may be degrading core model capacities like generalization, creativity, and (continual) learning. Therefore, understanding and mitigating FER could be critical to the future of representation learning.
Recently, feature relation learning has drawn widespread attention in cross-spectral image patch matching. However, existing related research focuses on capturing diverse feature relations between image patches and ignores sufficient intrinsic feature representations of individual image patches. To address this limitation, we propose an innovative relational representation learning that simultaneously focuses on sufficiently mining the intrinsic features of individual image patches and the feature relations between image patches. Based on this, we construct a Relational Representation Learning Network (RRL-Net). Specifically, we innovatively construct an autoencoder to effectively characterize the individual intrinsic features, and introduce a feature interaction learning (FIL) module to extract deep-level feature relations. Meanwhile, to further fully mine individual intrinsic features, a lightweight multi-dimensional global-to-local attention (MGLA) module is constructed to enhance the global feature extraction of individual image patches and capture local dependencies within global features. By combining the MGLA module, we further explore the feature extraction network and construct an attention-based lightweight feature extraction (ALFE) network. Furthermore, a multi-loss post-pruning (MLPP) optimization strategy is proposed, which can greatly facilitate network optimization while avoiding increases in parameters and inference time. Extensive experiments demonstrate that our RRL-Net achieves state-of-the-art (SOTA) performance on multiple public datasets. Our code is available at https://github.com/YuChuang1205/RRL-Net
We present point2vec, a self-supervised method for learning point cloud representations through masked prediction of a teacher network's latent features. Building on data2vec, we investigate a limitation of applying this approach to point clouds: positional information associated with masked patches reveals the overall object shape to the student, weakening the learning task even under heavy masking. point2vec addresses this issue by passing only visible patches to the student encoder and introducing a shallow decoder to predict representations for masked patches. The teacher processes the complete point cloud to provide contextualized training targets. These targets capture global context through the teacher's self-attention, providing supervision beyond the local geometry of individual patches. This design conceals masked-patch positions from the student and reduces its computational cost during pre-training. Our ablations show that the decoder alone provides only part of the improvement; concealing positional information is key. After pre-training on ShapeNet, point2vec outperforms the evaluated self-supervised baselines on shape classification on ModelNet40 and ScanObjectNN and few-shot classification on ModelNet40, while achieving competitive part segmentation results on ShapeNetPart.
Document image dewarping remains a challenging task in the deep learning era. While existing methods have improved by leveraging text line awareness, they typically focus only on a single horizontal dimension. In this paper, we propose a fine-grained deformation perception model that focuses on Dual Dimensions of document horizontal-vertical-lines to improve document Dewarping called D2Dewarp. It can perceive distortion trends in different directions across document details. To combine the horizontal and vertical granularity features, an effective fusion module based on X and Y coordinate is designed to facilitate interaction and constraint between the two dimensions for feature complementarity. Due to the lack of annotated line features in current public dewarping datasets, we also propose an automatic fine-grained annotation method using public document texture images and an automatic rendering engine to build a new large-scale distortion training dataset. The code and dataset will be publicly released. On public Chinese and English benchmarks, both quantitative and qualitative results show that our method achieves better rectification results compared with the state-of-the-art methods. The dataset will be publicly available at https://github.com/xiaomore/DocDewarpHV
The collection and release of street-level recordings as Open Data play a vital role in advancing autonomous driving systems and AI research. However, these datasets pose significant privacy risks, particularly for pedestrians, due to the presence of Personally Identifiable Information (PII) that extends beyond biometric traits such as faces. In this paper, we present cRID, a novel cross-modal framework combining Large Vision-Language Models, Graph Attention Networks, and representation learning to detect textual describable clues of PII and enhance person re-identification (Re-ID). Our approach focuses on identifying and leveraging interpretable features, enabling the detection of semantically meaningful PII beyond low-level appearance cues. We conduct a systematic evaluation of PII presence in person image datasets. Our experiments show improved performance in practical cross-dataset Re-ID scenarios, notably from Market-1501 to CUHK03-np (detected), highlighting the framework's practical utility. Code is available at https://github.com/RAufschlaeger/cRID.
LiDAR representation learning aims to extract rich structural and semantic information from large-scale, readily available datasets, reducing reliance on costly human annotations. However, existing LiDAR representation strategies often overlook the inherent spatiotemporal cues in LiDAR sequences, limiting their effectiveness. In this work, we propose LiMA, a novel long-term image-to-LiDAR Memory Aggregation framework that explicitly captures longer range temporal correlations to enhance LiDAR representation learning. LiMA comprises three key components: 1) a Cross-View Aggregation module that aligns and fuses overlapping regions across neighboring camera views, constructing a more unified and redundancy-free memory bank; 2) a Long-Term Feature Propagation mechanism that efficiently aligns and integrates multi-frame image features, reinforcing temporal coherence during LiDAR representation learning; and 3) a Cross-Sequence Memory Alignment strategy that enforces consistency across driving sequences, improving generalization to unseen environments. LiMA maintains high pretraining efficiency and incurs no additional computational overhead during downstream tasks. Extensive experiments on mainstream LiDAR-based perception benchmarks demonstrate that LiMA significantly improves both LiDAR semantic segmentation and 3D object detection. We hope this work inspires more effective pretraining paradigms for autonomous driving. The code has be made publicly accessible for future research.
The shape of a molecule determines its physicochemical and biological properties. However, it is often underrepresented in standard molecular representation learning approaches. Here, we propose using the Euler Characteristic Transform (ECT) as a geometrical-topological descriptor. Computed directly on a molecular graph derived from handcrafted atomic features, the ECT enables the extraction of multiscale structural features, offering a novel way to represent and encode molecular shape in the feature space. We assess the predictive performance of this representation across nine benchmark regression datasets, all centered around predicting the inhibition constant $K_i$. In addition, we compare our proposed ECT-based representation against traditional molecular representations and methods, such as molecular fingerprints/descriptors and graph neural networks (GNNs). Our results show that our ECT-based representation achieves competitive performance, ranking among the best-performing methods on several datasets. More importantly, its combination with traditional representations, particularly with the AVALON fingerprint, significantly \emph{enhances predictive performance}, outperforming other methods on most datasets. These findings highlight the complementary value of multiscale topological information and its potential for being combined with established techniques. Our study suggests that hybrid approaches incorporating explicit shape information can lead to more informative and robust molecular representations, enhancing and opening new avenues in molecular machine learning tasks. To support reproducibility and foster open biomedical research, we provide open access to all experiments and code used in this work.
Semantic scene completion (SSC) aims to infer both the 3D geometry and semantics of a scene from single images. In contrast to prior work on SSC that heavily relies on expensive ground-truth annotations, we approach SSC in an unsupervised setting. Our novel method, SceneDINO, adapts techniques from self-supervised representation learning and 2D unsupervised scene understanding to SSC. Our training exclusively utilizes multi-view consistency self-supervision without any form of semantic or geometric ground truth. Given a single input image, SceneDINO infers the 3D geometry and expressive 3D DINO features in a feed-forward manner. Through a novel 3D feature distillation approach, we obtain unsupervised 3D semantics. In both 3D and 2D unsupervised scene understanding, SceneDINO reaches state-of-the-art segmentation accuracy. Linear probing our 3D features matches the segmentation accuracy of a current supervised SSC approach. Additionally, we showcase the domain generalization and multi-view consistency of SceneDINO, taking the first steps towards a strong foundation for single image 3D scene understanding.
Accurate characterization of the equilibrium distributions of complex molecular systems and their dependence on environmental factors such as temperature is essential for understanding thermodynamic properties and transition mechanisms. Projecting these distributions onto meaningful low-dimensional representations enables interpretability and downstream analysis. Recent advances in generative AI, particularly flow models such as Normalizing Flows (NFs), have shown promise in modeling such distributions, but their scope is limited without tailored representation learning. In this work, we introduce Latent Thermodynamic Flows (LaTF), an end-to-end framework that tightly integrates representation learning and generative modeling. LaTF unifies the State Predictive Information Bottleneck (SPIB) with NFs to simultaneously learn low-dimensional latent representations, referred to as Collective Variables (CVs), classify metastable states, and generate equilibrium distributions across temperatures beyond the training data. The two components of representation learning and generative modeling are optimized jointly, ensuring that the learned latent features capture the system's slow, important degrees of freedom while the generative model accurately reproduces the system's equilibrium behavior. We demonstrate LaTF's effectiveness across diverse systems, including a model potential, the Chignolin protein, and cluster of Lennard Jones particles, with thorough evaluations and benchmarking using multiple metrics and extensive simulations. Finally, we apply LaTF to a RNA tetraloop system, where despite using simulation data from only two temperatures, LaTF reconstructs the temperature-dependent structural ensemble and melting behavior, consistent with experimental and prior extensive computational results.
Pruning is widely used to reduce the complexity of deep learning models, but its effects on interpretability and representation learning remain poorly understood. This paper investigates how pruning influences vision models across three key dimensions: (i) interpretability, (ii) unsupervised object discovery, and (iii) alignment with human perception. We first analyze different vision network architectures to examine how varying sparsity levels affect feature attribution interpretability methods. Additionally, we explore whether pruning promotes more succinct and structured representations, potentially improving unsupervised object discovery by discarding redundant information while preserving essential features. Finally, we assess whether pruning enhances the alignment between model representations and human perception, investigating whether sparser models focus on more discriminative features similarly to humans. Our findings also reveal the presence of sweet spots, where sparse models exhibit higher interpretability, downstream generalization and human alignment. However, these spots highly depend on the network architectures and their size in terms of trainable parameters. Our results suggest a complex interplay between these three dimensions, highlighting the importance of investigating when and how pruning benefits vision representations.
Learning semantically meaningful representations from unstructured 3D point clouds remains a central challenge in computer vision, especially in the absence of large-scale labeled datasets. While masked point modeling (MPM) is widely used in self-supervised 3D learning, its reconstruction-based objective can limit its ability to capture high-level semantics. We propose AsymDSD, an Asymmetric Dual Self-Distillation framework that unifies masked modeling and invariance learning through prediction in the latent space rather than the input space. AsymDSD builds on a joint embedding architecture and introduces several key design choices: an efficient asymmetric setup, disabling attention between masked queries to prevent shape leakage, multi-mask sampling, and a point cloud adaptation of multi-crop. AsymDSD achieves state-of-the-art results on ScanObjectNN (90.53%) and further improves to 93.72% when pretrained on 930k shapes, surpassing prior methods.
In this paper, we propose KaLM-Embedding-V2, a versatile and compact embedding model, which achieves impressive performance in general-purpose text embedding tasks by leveraging superior training techniques and data. Our key innovations include: (1) To better align the architecture with representation learning, we remove the causal attention mask and adopt a fully bidirectional transformer with simple yet effective mean-pooling to produce fixed-length embeddings; (2) We employ a multi-stage training pipeline: (i) pre-training on large-scale weakly supervised open-source corpora; (ii) fine-tuning on high-quality retrieval and non-retrieval datasets; and (iii) model-soup parameter averaging for robust generalization. Besides, we introduce a focal-style reweighting mechanism that concentrates learning on difficult samples and an online hard-negative mixing strategy to continuously enrich hard negatives without expensive offline mining; (3) We collect over 20 categories of data for pre-training and 100 categories of data for fine-tuning, to boost both the performance and generalization of the embedding model. Extensive evaluations on the Massive Text Embedding Benchmark (MTEB) Chinese and English show that our model significantly outperforms others of comparable size, and competes with 3x, 14x, 18x, and 26x larger embedding models, setting a new standard for a versatile and compact embedding model with less than 1B parameters.
Riemannian representation learning typically relies on approximating densities on chosen manifolds. This involves optimizing difficult objectives, potentially harming models. To completely circumvent this issue, we introduce the Riemannian generative decoder which finds manifold-valued maximum likelihood latents with a Riemannian optimizer while training a decoder network. By discarding the encoder, we vastly simplify the manifold constraint compared to current approaches which often only handle few specific manifolds. We validate our approach on three case studies -- a synthetic branching diffusion process, human migrations inferred from mitochondrial DNA, and cells undergoing a cell division cycle -- each showing that learned representations respect the prescribed geometry and capture intrinsic non-Euclidean structure. Our method requires only a decoder, is compatible with existing architectures, and yields interpretable latent spaces aligned with data geometry.
Extrachromosomal circular DNA (eccDNA) plays key regulatory roles and contributes to oncogene overexpression in cancer through high-copy amplification and long-range interactions. Despite advances in modeling, no pre-trained models currently support full-length circular eccDNA for downstream analysis. Existing genomic models are either limited to single-nucleotide resolution or hindered by the inefficiency of the quadratic attention mechanism. Here, we introduce eccDNAMamba, the first bidirectional state-space encoder tailored for circular DNA sequences. It combines forward and reverse passes for full-context representation learning with linear-time complexity, and preserves circular structure through a novel augmentation strategy. Tested on two real-world datasets, eccDNAMamba achieves strong classification performance and scales to sequences up to 200 Kbp, offering a robust and efficient framework for modeling circular genomes. Our codes are available at https://github.com/zzq1zh/GenAI-Lab.
The prediction of crystal properties is essential for understanding structure-property relationships and accelerating the discovery of functional materials. However, conventional approaches relying on experimental measurements or density functional theory (DFT) calculations are often resource-intensive, limiting their scalability. Machine learning (ML) models offer a promising alternative by learning complex structure-property relationships from data, enabling faster predictions. Yet, existing ML models often rely on labeled data, adopt representations that poorly capture essential structural characteristics, and lack integration with physical principles--factors that limit their generalizability and interpretability. Here, we introduce CLOUD (Crystal Language mOdel for Unified and Differentiable materials modeling), a transformer-based framework trained on a novel Symmetry-Consistent Ordered Parameter Encoding (SCOPE) that encodes crystal symmetry, Wyckoff positions, and composition in a compact, coordinate-free string representation. Pre-trained on over six million crystal structures, CLOUD is fine-tuned on multiple downstream tasks and achieves competitive performance in predicting a wide range of material properties, demonstrating strong scaling performance. Furthermore, as proof of concept of differentiable materials modeling, CLOUD is applied to predict the phonon internal energy and heat capacity, which integrates the Debye model to preserve thermodynamic consistency. The CLOUD-DEBYE framework enforces thermodynamic consistency and enables temperature-dependent property prediction without requiring additional data. These results demonstrate the potential of CLOUD as a scalable and physics-informed foundation model for crystalline materials, unifying symmetry-consistent representations with physically grounded learning for property prediction and materials discovery.
Continuous sign language recognition (CSLR) aims to transcribe untrimmed videos into glosses, which are typically textual words. Recent studies indicate that the lack of large datasets and precise annotations has become a bottleneck for CSLR due to insufficient training data. To address this, some works have developed cross-modal solutions to align visual and textual modalities. However, they typically extract textual features from glosses without fully utilizing their knowledge. In this paper, we propose the Hierarchical Sub-action Tree (HST), termed HST-CSLR, to efficiently combine gloss knowledge with visual representation learning. By incorporating gloss-specific knowledge from large language models, our approach leverages textual information more effectively. Specifically, we construct an HST for textual information representation, aligning visual and textual modalities step-by-step and benefiting from the tree structure to reduce computational complexity. Additionally, we impose a contrastive alignment enhancement to bridge the gap between the two modalities. Experiments on four datasets (PHOENIX-2014, PHOENIX-2014T, CSL-Daily, and Sign Language Gesture) demonstrate the effectiveness of our HST-CSLR.
Scalp electroencephalography (EEG) and intracranial EEG (iEEG) are vital for epilepsy diagnosis and treatment. Their unified analysis offers the potential to harness the complementary strengths of each modality but is challenging due to variations in recording montages, amplitude and signal-to-noise ratio (SNR), and frequency components. To address the aforementioned challenges, this paper introduces EpiNT, a novel Transformer-based pre-trained model for unified EEG and iEEG analysis. EpiNT employs channel-independent modeling with masked autoencoders (MAE) and vector quantization (VQ), along with a frequency domain mapping quantizer to capture crucial frequency features. Pre-trained on over 2,700 hours of multi-modal clinical neurophysiological data from 1,199 patients, EpiNT outperformed both randomly initialized models and other pre-trained methods on six downstream classification tasks, demonstrating robust representation learning capabilities. This work presents a promising approach for unified epilepsy neurophysiology analysis.
World models are critical for autonomous driving to simulate environmental dynamics and generate synthetic data. Existing methods struggle to disentangle ego-vehicle motion (perspective shifts) from scene evolvement (agent interactions), leading to suboptimal predictions. Instead, we propose to separate environmental changes from ego-motion by leveraging the scene-centric coordinate systems. In this paper, we introduce COME: a framework that integrates scene-centric forecasting Control into the Occupancy world ModEl. Specifically, COME first generates ego-irrelevant, spatially consistent future features through a scene-centric prediction branch, which are then converted into scene condition using a tailored ControlNet. These condition features are subsequently injected into the occupancy world model, enabling more accurate and controllable future occupancy predictions. Experimental results on the nuScenes-Occ3D dataset show that COME achieves consistent and significant improvements over state-of-the-art (SOTA) methods across diverse configurations, including different input sources (ground-truth, camera-based, fusion-based occupancy) and prediction horizons (3s and 8s). For example, under the same settings, COME achieves 26.3% better mIoU metric than DOME and 23.7% better mIoU metric than UniScene. These results highlight the efficacy of disentangled representation learning in enhancing spatio-temporal prediction fidelity for world models. Code and videos will be available at https://github.com/synsin0/COME.
Large Language Models (LLMs) are powerful tools with profound societal impacts, yet their ability to generate responses to diverse and uncontrolled inputs leaves them vulnerable to adversarial attacks. While existing defenses often struggle to generalize across varying attack types, recent advancements in representation engineering offer promising alternatives. In this work, we propose a defense framework that formulates model defense as a contrastive representation learning (CRL) problem. Our method finetunes a model using a triplet-based loss combined with adversarial hard negative mining to encourage separation between benign and harmful representations. Our experimental results across multiple models demonstrate that our approach outperforms prior representation engineering-based defenses, improving robustness against both input-level and embedding-space attacks without compromising standard performance. Our code is available at https://github.com/samuelsimko/crl-llm-defense
Transfer learning is a cornerstone of modern machine learning, promising a way to adapt models pretrained on a broad mix of data to new tasks with minimal new data. However, a significant challenge remains in ensuring that transferred features are sufficient to handle unseen datasets, amplified by the difficulty of quantifying whether two tasks are "related". To address these challenges, we evaluate model transfer from a pretraining mixture to each of its component tasks, assessing whether pretrained features can match the performance of task-specific direct training. We identify a fundamental limitation in deep learning models -- an "information saturation bottleneck" -- where networks fail to learn new features once they encode similar competing features during training. When restricted to learning only a subset of key features during pretraining, models will permanently lose critical features for transfer and perform inconsistently on data distributions, even components of the training mixture. Empirical evidence from published studies suggests that this phenomenon is pervasive in deep learning architectures -- factors such as data distribution or ordering affect the features that current representation learning methods can learn over time. This study suggests that relying solely on large-scale networks may not be as effective as focusing on task-specific training, when available. We propose richer feature representations as a potential solution to better generalize across new datasets and, specifically, present existing methods alongside a novel approach, the initial steps towards addressing this challenge.