Multiview feature learning aims to learn discriminative features by integrating the distinct information in each view. However, most existing methods still face significant challenges in learning view-consistency features, which are crucial for effective multiview learning. Motivated by the theories of CCA and contrastive learning in multiview feature learning, we propose the hierarchical consensus network (HCN) in this paper. The HCN derives three consensus indices for capturing the hierarchical consensus across views, which are classifying consensus, coding consensus, and global consensus, respectively. Specifically, classifying consensus reinforces class-level correspondence between views from a CCA perspective, while coding consensus closely resembles contrastive learning and reflects contrastive comparison of individual instances. Global consensus aims to extract consensus information from two perspectives simultaneously. By enforcing the hierarchical consensus, the information within each view is better integrated to obtain more comprehensive and discriminative features. The extensive experimental results obtained on four multiview datasets demonstrate that the proposed method significantly outperforms several state-of-the-art methods.
Multiview learning (MVL) seeks to leverage the benefits of diverse perspectives to complement each other, effectively extracting and utilizing the latent information within the dataset. Several twin support vector machine-based MVL (MvTSVM) models have been introduced and demonstrated outstanding performance in various learning tasks. However, MvTSVM-based models face significant challenges in the form of computational complexity due to four matrix inversions, the need to reformulate optimization problems in order to employ kernel-generated surfaces for handling non-linear cases, and the constraint of uniform noise assumption in the training data. Particularly in cases where the data possesses a heteroscedastic error structure, these challenges become even more pronounced. In view of the aforementioned challenges, we propose multiview twin parametric margin support vector machine (MvTPMSVM). MvTPMSVM constructs parametric margin hyperplanes corresponding to both classes, aiming to regulate and manage the impact of the heteroscedastic noise structure existing within the data. The proposed MvTPMSVM model avoids the explicit computation of matrix inversions in the dual formulation, leading to enhanced computational efficiency. We perform an extensive assessment of the MvTPMSVM model using benchmark datasets such as UCI, KEEL, synthetic, and Animals with Attributes (AwA). Our experimental results, coupled with rigorous statistical analyses, confirm the superior generalization capabilities of the proposed MvTPMSVM model compared to the baseline models. The source code of the proposed MvTPMSVM model is available at \url{https://github.com/mtanveer1/MvTPMSVM}.
It is increasingly common in a wide variety of applied settings to collect data of multiple different types on the same set of samples. Our particular focus in this article is on studying relationships between such multiview features and responses. A motivating application arises in the context of precision medicine where multi-omics data are collected to correlate with clinical outcomes. It is of interest to infer dependence within and across views while combining multimodal information to improve the prediction of outcomes. The signal-to-noise ratio can vary substantially across views, motivating more nuanced statistical tools beyond standard late and early fusion. This challenge comes with the need to preserve interpretability, select features, and obtain accurate uncertainty quantification. We propose a joint additive factor regression model (JAFAR) with a structured additive design, accounting for shared and view-specific components. We ensure identifiability via a novel dependent cumulative shrinkage process (D-CUSP) prior. We provide an efficient implementation via a partially collapsed Gibbs sampler and extend our approach to allow flexible feature and outcome distributions. Prediction of time-to-labor onset from immunome, metabolome, and proteome data illustrates performance gains against state-of-the-art competitors. Our open-source software (R package) is available at https://github.com/niccoloanceschi/jafar.
The package mvlearnR and accompanying Shiny App is intended for integrating data from multiple sources or views or modalities (e.g. genomics, proteomics, clinical and demographic data). Most existing software packages for multiview learning are decentralized and offer limited capabilities, making it difficult for users to perform comprehensive integrative analysis. The new package wraps statistical and machine learning methods and graphical tools, providing a convenient and easy data integration workflow. For users with limited programming language, we provide a Shiny Application to facilitate data integration anywhere and on any device. The methods have potential to offer deeper insights into complex disease mechanisms. Availability and Implementation: mvlearnR is available from the following GitHub repository: https://github.com/lasandrall/mvlearnR. The web application is hosted on shinyapps.io and available at: https://multi-viewlearn.shinyapps.io/MultiView_Modeling/
The Canonical Correlation Analysis (CCA) family of methods is foundational in multiview learning. Regularised linear CCA methods can be seen to generalise Partial Least Squares (PLS) and be unified with a Generalized Eigenvalue Problem (GEP) framework. However, classical algorithms for these linear methods are computationally infeasible for large-scale data. Extensions to Deep CCA show great promise, but current training procedures are slow and complicated. First we propose a novel unconstrained objective that characterizes the top subspace of GEPs. Our core contribution is a family of fast algorithms for stochastic PLS, stochastic CCA, and Deep CCA, simply obtained by applying stochastic gradient descent (SGD) to the corresponding CCA objectives. Our algorithms show far faster convergence and recover higher correlations than the previous state-of-the-art on all standard CCA and Deep CCA benchmarks. These improvements allow us to perform a first-of-its-kind PLS analysis of an extremely large biomedical dataset from the UK Biobank, with over 33,000 individuals and 500,000 features. Finally, we apply our algorithms to match the performance of `CCA-family' Self-Supervised Learning (SSL) methods on CIFAR-10 and CIFAR-100 with minimal hyper-parameter tuning, and also present theory to clarify the links between these methods and classical CCA, laying the groundwork for future insights.
We are concerned with a challenging scenario in unpaired multiview video learning. In this case, the model aims to learn comprehensive multiview representations while the cross-view semantic information exhibits variations. We propose Semantics-based Unpaired Multiview Learning (SUM-L) to tackle this unpaired multiview learning problem. The key idea is to build cross-view pseudo-pairs and do view-invariant alignment by leveraging the semantic information of videos. To facilitate the data efficiency of multiview learning, we further perform video-text alignment for first-person and third-person videos, to fully leverage the semantic knowledge to improve video representations. Extensive experiments on multiple benchmark datasets verify the effectiveness of our framework. Our method also outperforms multiple existing view-alignment methods, under the more challenging scenario than typical paired or unpaired multimodal or multiview learning. Our code is available at https://github.com/wqtwjt1996/SUM-L.
Appendicitis is among the most frequent reasons for pediatric abdominal surgeries. Previous decision support systems for appendicitis have focused on clinical, laboratory, scoring, and computed tomography data and have ignored abdominal ultrasound, despite its noninvasive nature and widespread availability. In this work, we present interpretable machine learning models for predicting the diagnosis, management and severity of suspected appendicitis using ultrasound images. Our approach utilizes concept bottleneck models (CBM) that facilitate interpretation and interaction with high-level concepts understandable to clinicians. Furthermore, we extend CBMs to prediction problems with multiple views and incomplete concept sets. Our models were trained on a dataset comprising 579 pediatric patients with 1709 ultrasound images accompanied by clinical and laboratory data. Results show that our proposed method enables clinicians to utilize a human-understandable and intervenable predictive model without compromising performance or requiring time-consuming image annotation when deployed. For predicting the diagnosis, the extended multiview CBM attained an AUROC of 0.80 and an AUPR of 0.92, performing comparably to similar black-box neural networks trained and tested on the same dataset.
Technological advances have enabled the generation of unique and complementary types of data or views (e.g. genomics, proteomics, metabolomics) and opened up a new era in multiview learning research with the potential to lead to new biomedical discoveries. We propose iDeepViewLearn (Interpretable Deep Learning Method for Multiview Learning) for learning nonlinear relationships in data from multiple views while achieving feature selection. iDeepViewLearn combines deep learning flexibility with the statistical benefits of data and knowledge-driven feature selection, giving interpretable results. Deep neural networks are used to learn view-independent low-dimensional embedding through an optimization problem that minimizes the difference between observed and reconstructed data, while imposing a regularization penalty on the reconstructed data. The normalized Laplacian of a graph is used to model bilateral relationships between variables in each view, therefore, encouraging selection of related variables. iDeepViewLearn is tested on simulated and two real-world data, including breast cancer-related gene expression and methylation data. iDeepViewLearn had competitive classification results and identified genes and CpG sites that differentiated between individuals who died from breast cancer and those who did not. The results of our real data application and simulations with small to moderate sample sizes suggest that iDeepViewLearn may be a useful method for small-sample-size problems compared to other deep learning methods for multiview learning.
Traditionally, deep learning methods for breast cancer classification perform a single-view analysis. However, radiologists simultaneously analyze all four views that compose a mammography exam, owing to the correlations contained in mammography views, which present crucial information for identifying tumors. In light of this, some studies have started to propose multi-view methods. Nevertheless, in such existing architectures, mammogram views are processed as independent images by separate convolutional branches, thus losing correlations among them. To overcome such limitations, in this paper, we propose a methodological approach for multi-view breast cancer classification based on parameterized hypercomplex neural networks. Thanks to hypercomplex algebra properties, our networks are able to model, and thus leverage, existing correlations between the different views that comprise a mammogram, thus mimicking the reading process performed by clinicians. This happens because hypercomplex networks capture both global properties, as standard neural models, as well as local relations, i.e., inter-view correlations, which real-valued networks fail at modeling. We define architectures designed to process two-view exams, namely PHResNets, and four-view exams, i.e., PHYSEnet and PHYBOnet. Through an extensive experimental evaluation conducted with publicly available datasets, we demonstrate that our proposed models clearly outperform real-valued counterparts and state-of-the-art methods, proving that breast cancer classification benefits from the proposed multi-view architectures. We also assess the method generalizability beyond mammogram analysis by considering different benchmarks, as well as a finer-scaled task such as segmentation. Full code and pretrained models for complete reproducibility of our experiments are freely available at https://github.com/ispamm/PHBreast.
Although many graph-based clustering methods attempt to model the stationary diffusion state in their objectives, their performance limits to using a predefined graph. We argue that the estimation of the stationary diffusion state can be achieved by gradient descent over neural networks. We specifically design the Stationary Diffusion State Neural Estimation (SDSNE) to exploit multiview structural graph information for co-supervised learning. We explore how to design a graph neural network specially for unsupervised multiview learning and integrate multiple graphs into a unified consensus graph by a shared self-attentional module. The view-shared self-attentional module utilizes the graph structure to learn a view-consistent global graph. Meanwhile, instead of using auto-encoder in most unsupervised learning graph neural networks, SDSNE uses a co-supervised strategy with structure information to supervise the model learning. The co-supervised strategy as the loss function guides SDSNE in achieving the stationary state. With the help of the loss and the self-attentional module, we learn to obtain a graph in which nodes in each connected component fully connect by the same weight. Experiments on several multiview datasets demonstrate effectiveness of SDSNE in terms of six clustering evaluation metrics.
Knowledge bases (KBs) are paramount in NLP. We employ multiview learning for increasing accuracy and coverage of entity type information in KBs. We rely on two metaviews: language and representation. For language, we consider high-resource and low-resource languages from Wikipedia. For representation, we consider representations based on the context distribution of the entity (i.e., on its embedding), on the entity's name (i.e., on its surface form) and on its description in Wikipedia. The two metaviews language and representation can be freely combined: each pair of language and representation (e.g., German embedding, English description, Spanish name) is a distinct view. Our experiments on entity typing with fine-grained classes demonstrate the effectiveness of multiview learning. We release MVET, a large multiview - and, in particular, multilingual - entity typing dataset we created. Mono- and multilingual fine-grained entity typing systems can be evaluated on this dataset.
In this paper we propose a boosting based multiview learning algorithm, referred to as PB-MVBoost, which iteratively learns i) weights over view-specific voters capturing view-specific information; and ii) weights over views by optimizing a PAC-Bayes multiview C-Bound that takes into account the accuracy of view-specific classifiers and the diversity between the views. We derive a generalization bound for this strategy following the PAC-Bayes theory which is a suitable tool to deal with models expressed as weighted combination over a set of voters. Different experiments on three publicly available datasets show the efficiency of the proposed approach with respect to state-of-art models.
Multiple kernel learning is a type of multiview learning that combines different data modalities by capturing view-specific patterns using kernels. Although supervised multiple kernel learning has been extensively studied, until recently, only a few unsupervised approaches have been proposed. In the meanwhile, adversarial learning has recently received much attention. Many works have been proposed to defend against adversarial examples. However, little is known about the effect of adversarial perturbation in the context of multiview learning, and even less in the unsupervised case. In this study, we show that adversarial features added to a view can make the existing approaches with the min-max formulation in multiple kernel clustering yield unfavorable clusters. To address this problem and inspired by recent works in adversarial learning, we propose a multiple kernel clustering method with the min-max framework that aims to be robust to such adversarial perturbation. We evaluate the robustness of our method on simulation data under different types of adversarial perturbations and show that it outperforms several compared existing methods. In the real data analysis, We demonstrate the utility of our method on a real-world problem.
We present convolutional neural network (CNN) based approaches for unsupervised multimodal subspace clustering. The proposed framework consists of three main stages - multimodal encoder, self-expressive layer, and multimodal decoder. The encoder takes multimodal data as input and fuses them to a latent space representation. The self-expressive layer is responsible for enforcing the self-expressiveness property and acquiring an affinity matrix corresponding to the data points. The decoder reconstructs the original input data. The network uses the distance between the decoder's reconstruction and the original input in its training. We investigate early, late and intermediate fusion techniques and propose three different encoders corresponding to them for spatial fusion. The self-expressive layers and multimodal decoders are essentially the same for different spatial fusion-based approaches. In addition to various spatial fusion-based methods, an affinity fusion-based network is also proposed in which the self-expressive layer corresponding to different modalities is enforced to be the same. Extensive experiments on three datasets show that the proposed methods significantly outperform the state-of-the-art multimodal subspace clustering methods.