Clinical notes in healthcare facilities are tagged with the International Classification of Diseases (ICD) code; a list of classification codes for medical diagnoses and procedures. ICD coding is a challenging multilabel text classification problem due to noisy clinical document inputs and long-tailed label distribution. Recent automated ICD coding efforts improve performance by encoding medical notes and codes with additional data and knowledge bases. However, most of them do not reflect how human coders generate the code: first, the coders select general code categories and then look for specific subcategories that are relevant to a patient's condition. Inspired by this, we propose a two-stage decoding mechanism to predict ICD codes. Our model uses the hierarchical properties of the codes to split the prediction into two steps: At first, we predict the parent code and then predict the child code based on the previous prediction. Experiments on the public MIMIC-III data set show that our model performs well in single-model settings without external data or knowledge.
Extreme Multilabel Text Classification (XMTC) is a text classification problem in which, (i) the output space is extremely large, (ii) each data point may have multiple positive labels, and (iii) the data follows a strongly imbalanced distribution. With applications in recommendation systems and automatic tagging of web-scale documents, the research on XMTC has been focused on improving prediction accuracy and dealing with imbalanced data. However, the robustness of deep learning based XMTC models against adversarial examples has been largely underexplored. In this paper, we investigate the behaviour of XMTC models under adversarial attacks. To this end, first, we define adversarial attacks in multilabel text classification problems. We categorize attacking multilabel text classifiers as (a) positive-targeted, where the target positive label should fall out of top-k predicted labels, and (b) negative-targeted, where the target negative label should be among the top-k predicted labels. Then, by experiments on APLC-XLNet and AttentionXML, we show that XMTC models are highly vulnerable to positive-targeted attacks but more robust to negative-targeted ones. Furthermore, our experiments show that the success rate of positive-targeted adversarial attacks has an imbalanced distribution. More precisely, tail classes are highly vulnerable to adversarial attacks for which an attacker can generate adversarial samples with high similarity to the actual data-points. To overcome this problem, we explore the effect of rebalanced loss functions in XMTC where not only do they increase accuracy on tail classes, but they also improve the robustness of these classes against adversarial attacks. The code for our experiments is available at https://github.com/xmc-aalto/adv-xmtc
\emph{Funnelling} (Fun) is a recently proposed method for cross-lingual text classification (CLTC) based on a two-tier learning ensemble for heterogeneous transfer learning (HTL). In this ensemble method, 1st-tier classifiers, each working on a different and language-dependent feature space, return a vector of calibrated posterior probabilities (with one dimension for each class) for each document, and the final classification decision is taken by a metaclassifier that uses this vector as its input. The metaclassifier can thus exploit class-class correlations, and this (among other things) gives Fun an edge over CLTC systems in which these correlations cannot be brought to bear. In this paper we describe \emph{Generalized Funnelling} (gFun), a generalization of Fun consisting of an HTL architecture in which 1st-tier components can be arbitrary \emph{view-generating functions}, i.e., language-dependent functions that each produce a language-independent representation ("view") of the (monolingual) document. We describe an instance of gFun in which the metaclassifier receives as input a vector of calibrated posterior probabilities (as in Fun) aggregated to other embedded representations that embody other types of correlations, such as word-class correlations (as encoded by \emph{Word-Class Embeddings}), word-word correlations (as encoded by \emph{Multilingual Unsupervised or Supervised Embeddings}), and word-context correlations (as encoded by \emph{multilingual BERT}). We show that this instance of \textsc{gFun} substantially improves over Fun and over state-of-the-art baselines, by reporting experimental results obtained on two large, standard datasets for multilingual multilabel text classification. Our code that implements gFun is publicly available.
While transformer-based finetuning techniques have proven effective in tasks that involve low-resource, low-data environments, a lack of properly established baselines and benchmark datasets make it hard to compare different approaches that are aimed at tackling the low-resource setting. In this work, we provide three contributions. First, we introduce two previously unreleased datasets as benchmark datasets for text classification and low-resource multilabel text classification for the low-resource language Filipino. Second, we pretrain better BERT and DistilBERT models for use within the Filipino setting. Third, we introduce a simple degradation test that benchmarks a model's resistance to performance degradation as the number of training samples are reduced. We analyze our pretrained model's degradation speeds and look towards the use of this method for comparing models aimed at operating within the low-resource setting. We release all our models and datasets for the research community to use.
Credit attribution is the task of associating individual parts in a document with their most appropriate class labels. It is an important task with applications to information retrieval and text summarization. When labeled training data is available, traditional approaches for sequence tagging can be used for credit attribution. However, generating such labeled datasets is expensive and time-consuming. In this paper, we present "Credit Attribution With Attention (CAWA)", a neural-network-based approach, that instead of using sentence-level labeled data, uses the set of class labels that are associated with an entire document as a source of distant-supervision. CAWA combines an attention mechanism with a multilabel classifier into an end-to-end learning framework to perform credit attribution. CAWA labels the individual sentences from the input document using the resultant attention-weights. CAWA improves upon the state-of-the-art credit attribution approach by not constraining a sentence to belong to just one class, but modeling each sentence as a distribution over all classes, leading to better modeling of semantically-similar classes. Experiments on the credit attribution task on a variety of datasets show that the sentence class labels generated by CAWA outperform the competing approaches. Additionally, on the multilabel text classification task, CAWA performs better than the competing credit attribution approaches.