Classifying geospatial imagery remains a major bottleneck for applications such as disaster response and land-use monitoring-particularly in regions where annotated data is scarce or unavailable. Existing tools (e.g., RS-CLIP) that claim zero-shot classification capabilities for satellite imagery nonetheless rely on task-specific pretraining and adaptation to reach competitive performance. We introduce GeoVision Labeler (GVL), a strictly zero-shot classification framework: a vision Large Language Model (vLLM) generates rich, human-readable image descriptions, which are then mapped to user-defined classes by a conventional Large Language Model (LLM). This modular, and interpretable pipeline enables flexible image classification for a large range of use cases. We evaluated GVL across three benchmarks-SpaceNet v7, UC Merced, and RESISC45. It achieves up to 93.2% zero-shot accuracy on the binary Buildings vs. No Buildings task on SpaceNet v7. For complex multi-class classification tasks (UC Merced, RESISC45), we implemented a recursive LLM-driven clustering to form meta-classes at successive depths, followed by hierarchical classification-first resolving coarse groups, then finer distinctions-to deliver competitive zero-shot performance. GVL is open-sourced at https://github.com/microsoft/geo-vision-labeler to catalyze adoption in real-world geospatial workflows.
Background: Accurate assessment of metastatic burden in axillary lymph nodes is crucial for guiding breast cancer treatment decisions, yet conventional imaging modalities struggle to differentiate metastatic burden levels and capture comprehensive lymph node characteristics. This study leverages dual-energy computed tomography (DECT) to exploit spectral-spatial information for improved multi-class classification. Purpose: To develop a noninvasive DECT-based model classifying sentinel lymph nodes into three categories: no metastasis ($N_0$), low metastatic burden ($N_{+(1-2)}$), and heavy metastatic burden ($N_{+(\geq3)}$), thereby aiding therapeutic planning. Methods: We propose a novel space-squeeze method combining two innovations: (1) a channel-wise attention mechanism to compress and recalibrate spectral-spatial features across 11 energy levels, and (2) virtual class injection to sharpen inter-class boundaries and compact intra-class variations in the representation space. Results: Evaluated on 227 biopsy-confirmed cases, our method achieved an average test AUC of 0.86 (95% CI: 0.80-0.91) across three cross-validation folds, outperforming established CNNs (VGG, ResNet, etc). The channel-wise attention and virtual class components individually improved AUC by 5.01% and 5.87%, respectively, demonstrating complementary benefits. Conclusions: The proposed framework enhances diagnostic AUC by effectively integrating DECT's spectral-spatial data and mitigating class ambiguity, offering a promising tool for noninvasive metastatic burden assessment in clinical practice.
We introduce FinTagging, the first full-scope, table-aware XBRL benchmark designed to evaluate the structured information extraction and semantic alignment capabilities of large language models (LLMs) in the context of XBRL-based financial reporting. Unlike prior benchmarks that oversimplify XBRL tagging as flat multi-class classification and focus solely on narrative text, FinTagging decomposes the XBRL tagging problem into two subtasks: FinNI for financial entity extraction and FinCL for taxonomy-driven concept alignment. It requires models to jointly extract facts and align them with the full 10k+ US-GAAP taxonomy across both unstructured text and structured tables, enabling realistic, fine-grained evaluation. We assess a diverse set of LLMs under zero-shot settings, systematically analyzing their performance on both subtasks and overall tagging accuracy. Our results reveal that, while LLMs demonstrate strong generalization in information extraction, they struggle with fine-grained concept alignment, particularly in disambiguating closely related taxonomy entries. These findings highlight the limitations of existing LLMs in fully automating XBRL tagging and underscore the need for improved semantic reasoning and schema-aware modeling to meet the demands of accurate financial disclosure. Code is available at our GitHub repository and data is at our Hugging Face repository.
Recent advances in LegalAI have primarily focused on individual case judgment analysis, often overlooking the critical appellate process within the judicial system. Appeals serve as a core mechanism for error correction and ensuring fair trials, making them highly significant both in practice and in research. To address this gap, we present the AppealCase dataset, consisting of 10,000 pairs of real-world, matched first-instance and second-instance documents across 91 categories of civil cases. The dataset also includes detailed annotations along five dimensions central to appellate review: judgment reversals, reversal reasons, cited legal provisions, claim-level decisions, and whether there is new information in the second instance. Based on these annotations, we propose five novel LegalAI tasks and conduct a comprehensive evaluation across 20 mainstream models. Experimental results reveal that all current models achieve less than 50% F1 scores on the judgment reversal prediction task, highlighting the complexity and challenge of the appeal scenario. We hope that the AppealCase dataset will spur further research in LegalAI for appellate case analysis and contribute to improving consistency in judicial decision-making.
We introduce Gradual Abstract Argumentation for Case-Based Reasoning (Gradual AA-CBR), a data-driven, neurosymbolic classification model in which the outcome is determined by an argumentation debate structure that is learned simultaneously with neural-based feature extractors. Each argument in the debate is an observed case from the training data, favouring their labelling. Cases attack or support those with opposing or agreeing labellings, with the strength of each argument and relationship learned through gradient-based methods. This argumentation debate structure provides human-aligned reasoning, improving model interpretability compared to traditional neural networks (NNs). Unlike the existing purely symbolic variant, Abstract Argumentation for Case-Based Reasoning (AA-CBR), Gradual AA-CBR is capable of multi-class classification, automatic learning of feature and data point importance, assigning uncertainty values to outcomes, using all available data points, and does not require binary features. We show that Gradual AA-CBR performs comparably to NNs whilst significantly outperforming existing AA-CBR formulations.
Deep learning models have driven significant progress in predicting protein function and interactions at the protein level. While these advancements have been invaluable for many biological applications such as enzyme engineering and function annotation, a more detailed perspective is essential for understanding protein functional mechanisms and evaluating the biological knowledge captured by models. To address this demand, we introduce VenusX, the first large-scale benchmark for fine-grained functional annotation and function-based protein pairing at the residue, fragment, and domain levels. VenusX comprises three major task categories across six types of annotations, including residue-level binary classification, fragment-level multi-class classification, and pairwise functional similarity scoring for identifying critical active sites, binding sites, conserved sites, motifs, domains, and epitopes. The benchmark features over 878,000 samples curated from major open-source databases such as InterPro, BioLiP, and SAbDab. By providing mixed-family and cross-family splits at three sequence identity thresholds, our benchmark enables a comprehensive assessment of model performance on both in-distribution and out-of-distribution scenarios. For baseline evaluation, we assess a diverse set of popular and open-source models, including pre-trained protein language models, sequence-structure hybrids, structure-based methods, and alignment-based techniques. Their performance is reported across all benchmark datasets and evaluation settings using multiple metrics, offering a thorough comparison and a strong foundation for future research. Code and data are publicly available at https://github.com/ai4protein/VenusX.
Kolmogorov-Arnold Networks (KAN) offer universal function approximation using univariate spline compositions without nonlinear activations. In this work, we integrate Error-Correcting Output Codes (ECOC) into the KAN framework to transform multi-class classification into multiple binary tasks, improving robustness via Hamming-distance decoding. Our proposed KAN with ECOC method outperforms vanilla KAN on a challenging blood cell classification dataset, achieving higher accuracy under diverse hyperparameter settings. Ablation studies further confirm that ECOC consistently enhances performance across FastKAN and FasterKAN variants. These results demonstrate that ECOC integration significantly boosts KAN generalizability in critical healthcare AI applications. To the best of our knowledge, this is the first integration of ECOC with KAN for enhancing multi-class medical image classification performance.
In this study, we focus on the analysis of financial data in a federated setting, wherein data is distributed across multiple clients or locations, and the raw data never leaves the local devices. Our primary focus is not only on the development of efficient learning frameworks (for protecting user data privacy) in the field of federated learning but also on the importance of designing models that are easier to interpret. In addition, we care about the robustness of the framework to outliers. To achieve these goals, we propose a robust federated logistic regression-based framework that strives to strike a balance between these goals. To verify the feasibility of our proposed framework, we carefully evaluate its performance not only on independently identically distributed (IID) data but also on non-IID data, especially in scenarios involving outliers. Extensive numerical results collected from multiple public datasets demonstrate that our proposed method can achieve comparable performance to those of classical centralized algorithms, such as Logistical Regression, Decision Tree, and K-Nearest Neighbors, in both binary and multi-class classification tasks.
The rapid advancement of large language models (LLMs) has introduced new challenges in distinguishing human-written text from AI-generated content. In this work, we explored a pipelined approach for AI-generated text detection that includes a feature extraction step (i.e. prompt-based rewriting features inspired by RAIDAR and content-based features derived from the NELA toolkit) followed by a classification module. Comprehensive experiments were conducted on the Defactify4.0 dataset, evaluating two tasks: binary classification to differentiate human-written and AI-generated text, and multi-class classification to identify the specific generative model used to generate the input text. Our findings reveal that NELA features significantly outperform RAIDAR features in both tasks, demonstrating their ability to capture nuanced linguistic, stylistic, and content-based differences. Combining RAIDAR and NELA features provided minimal improvement, highlighting the redundancy introduced by less discriminative features. Among the classifiers tested, XGBoost emerged as the most effective, leveraging the rich feature sets to achieve high accuracy and generalisation.
Accurate identification of crop and weed species is critical for precision agriculture and sustainable farming. However, it remains a challenging task due to a variety of factors -- a high degree of visual similarity among species, environmental variability, and a continued lack of large, agriculture-specific image data. We introduce iNatAg, a large-scale image dataset which contains over 4.7 million images of 2,959 distinct crop and weed species, with precise annotations along the taxonomic hierarchy from binary crop/weed labels to specific species labels. Curated from the broader iNaturalist database, iNatAg contains data from every continent and accurately reflects the variability of natural image captures and environments. Enabled by this data, we train benchmark models built upon the Swin Transformer architecture and evaluate the impact of various modifications such as the incorporation of geospatial data and LoRA finetuning. Our best models achieve state-of-the-art performance across all taxonomic classification tasks, achieving 92.38\% on crop and weed classification. Furthermore, the scale of our dataset enables us to explore incorrect misclassifications and unlock new analytic possiblities for plant species. By combining large-scale species coverage, multi-task labels, and geographic diversity, iNatAg provides a new foundation for building robust, geolocation-aware agricultural classification systems. We release the iNatAg dataset publicly through AgML (https://github.com/Project-AgML/AgML), enabling direct access and integration into agricultural machine learning workflows.
Automatic language identification is frequently framed as a multi-class classification problem. However, when creating digital corpora for less commonly written languages, it may be more appropriate to consider it a data mining problem. For these varieties, one knows ahead of time that the vast majority of documents are of little interest. By minimizing resources spent on classifying such documents, we can create corpora much faster and with better coverage than using established pipelines. To demonstrate the effectiveness of the language mining perspective, we introduce a new pipeline and corpora for several French-based Creoles.
The softmax function is a cornerstone of multi-class classification, integral to a wide range of machine learning applications, from large-scale retrieval and ranking models to advanced large language models. However, its computational cost grows linearly with the number of classes, which becomes prohibitively expensive in scenarios with millions or even billions of classes. The sampled softmax, which relies on self-normalized importance sampling, has emerged as a powerful alternative, significantly reducing computational complexity. Yet, its estimator remains unbiased only when the sampling distribution matches the true softmax distribution. To improve both approximation accuracy and sampling efficiency, we propose the MIDX Sampler, a novel adaptive sampling strategy based on an inverted multi-index approach. Concretely, we decompose the softmax probability into several multinomial probabilities, each associated with a specific set of codewords and the last associated with the residual score of queries, thus reducing time complexity to the number of codewords instead of the number of classes. To further boost efficiency, we replace the query-specific residual probability with a simple uniform distribution, simplifying the computation while retaining high performance. Our method is backed by rigorous theoretical analysis, addressing key concerns such as sampling bias, gradient bias, convergence rates, and generalization error bounds. The results demonstrate that a smaller divergence from the ideal softmax distribution leads to faster convergence and improved generalization. Extensive experiments on large-scale language models, sequential recommenders, and extreme multi-class classification tasks confirm that the MIDX-Sampler delivers superior effectiveness and efficiency compared to existing approaches.
In Continual Learning (CL), while existing work primarily focuses on the multi-class classification task, there has been limited research on Multi-Label Learning (MLL). In practice, MLL datasets are often class-imbalanced, making it inherently challenging, a problem that is even more acute in CL. Due to its sensitivity to imbalance, Macro-AUC is an appropriate and widely used measure in MLL. However, there is no research to optimize Macro-AUC in MLCL specifically. To fill this gap, in this paper, we propose a new memory replay-based method to tackle the imbalance issue for Macro-AUC-oriented MLCL. Specifically, inspired by recent theory work, we propose a new Reweighted Label-Distribution-Aware Margin (RLDAM) loss. Furthermore, to be compatible with the RLDAM loss, a new memory-updating strategy named Weight Retain Updating (WRU) is proposed to maintain the numbers of positive and negative instances of the original dataset in memory. Theoretically, we provide superior generalization analyses of the RLDAM-based algorithm in terms of Macro-AUC, separately in batch MLL and MLCL settings. This is the first work to offer theoretical generalization analyses in MLCL to our knowledge. Finally, a series of experimental results illustrate the effectiveness of our method over several baselines. Our codes are available at https://github.com/ML-Group-SDU/Macro-AUC-CL.
The accuracy of deep neural networks is significantly influenced by the effectiveness of mini-batch construction during training. In single-label scenarios, such as binary and multi-class classification tasks, it has been demonstrated that batch selection algorithms preferring samples with higher uncertainty achieve better performance than difficulty-based methods. Although there are two batch selection methods tailored for multi-label data, none of them leverage important uncertainty information. Adapting the concept of uncertainty to multi-label data is not a trivial task, since there are two issues that should be tackled. First, traditional variance or entropy-based uncertainty measures ignore fluctuations of predictions within sliding windows and the importance of the current model state. Second, existing multi-label methods do not explicitly exploit the label correlations, particularly the uncertainty-based label correlations that evolve during the training process. In this paper, we propose an uncertainty-based multi-label batch selection algorithm. It assesses uncertainty for each label by considering differences between successive predictions and the confidence of current outputs, and further leverages dynamic uncertainty-based label correlations to emphasize instances whose uncertainty is synergistically expressed across multiple labels. Empirical studies demonstrate the effectiveness of our method in improving the performance and accelerating the convergence of various multi-label deep learning models.
The application of deep learning methods, particularly foundation models, in biological research has surged in recent years. These models can be text-based or trained on underlying biological data, especially omics data of various types. However, comparing the performance of these models consistently has proven to be a challenge due to differences in training data and downstream tasks. To tackle this problem, we developed an architecture-agnostic benchmarking approach that, instead of evaluating the models directly, leverages entity representation vectors from each model and trains simple predictive models for each benchmarking task. This ensures that all types of models are evaluated using the same input and output types. Here we focus on gene properties collected from professionally curated bioinformatics databases. These gene properties are categorized into five major groups: genomic properties, regulatory functions, localization, biological processes, and protein properties. Overall, we define hundreds of tasks based on these databases, which include binary, multi-label, and multi-class classification tasks. We apply these benchmark tasks to evaluate expression-based models, large language models, protein language models, DNA-based models, and traditional baselines. Our findings suggest that text-based models and protein language models generally outperform expression-based models in genomic properties and regulatory functions tasks, whereas expression-based models demonstrate superior performance in localization tasks. These results should aid in the development of more informed artificial intelligence strategies for biological understanding and therapeutic discovery. To ensure the reproducibility and transparency of our findings, we have made the source code and benchmark data publicly accessible for further investigation and expansion at github.com/BiomedSciAI/gene-benchmark.
Annotating data for sensitive labels (e.g., disease, smoking) poses a potential threats to individual privacy in many real-world scenarios. To cope with this problem, we propose a novel setting to protect privacy of each instance, namely learning from concealed labels for multi-class classification. Concealed labels prevent sensitive labels from appearing in the label set during the label collection stage, which specifies none and some random sampled insensitive labels as concealed labels set to annotate sensitive data. In this paper, an unbiased estimator can be established from concealed data under mild assumptions, and the learned multi-class classifier can not only classify the instance from insensitive labels accurately but also recognize the instance from the sensitive labels. Moreover, we bound the estimation error and show that the multi-class classifier achieves the optimal parametric convergence rate. Experiments demonstrate the significance and effectiveness of the proposed method for concealed labels in synthetic and real-world datasets.
Precise breast cancer classification on histopathological images has the potential to greatly improve the diagnosis and patient outcome in oncology. The data imbalance problem largely stems from the inherent imbalance within medical image datasets, where certain tumor subtypes may appear much less frequently. This constitutes a considerable limitation in biased model predictions that can overlook critical but rare classes. In this work, we adopted EfficientNet, a state-of-the-art convolutional neural network (CNN) model that balances high accuracy with computational cost efficiency. To address data imbalance, we introduce an intensive data augmentation pipeline and cost-sensitive learning, improving representation and ensuring that the model does not overly favor majority classes. This approach provides the ability to learn effectively from rare tumor types, improving its robustness. Additionally, we fine-tuned the model using transfer learning, where weights in the beginning trained on a binary classification task were adopted to multi-class classification, improving the capability to detect complex patterns within the BreakHis dataset. Our results underscore significant improvements in the binary classification performance, achieving an exceptional recall increase for benign cases from 0.92 to 0.95, alongside an accuracy enhancement from 97.35 % to 98.23%. Our approach improved the performance of multi-class tasks from 91.27% with regular augmentation to 94.54% with intensive augmentation, reaching 95.04% with transfer learning. This framework demonstrated substantial gains in precision in the minority classes, such as Mucinous carcinoma and Papillary carcinoma, while maintaining high recall consistently across these critical subtypes, as further confirmed by confusion matrix analysis.
Fine-grained classification of whole slide images (WSIs) is essential in precision oncology, enabling precise cancer diagnosis and personalized treatment strategies. The core of this task involves distinguishing subtle morphological variations within the same broad category of gigapixel-resolution images, which presents a significant challenge. While the multi-instance learning (MIL) paradigm alleviates the computational burden of WSIs, existing MIL methods often overlook hierarchical label correlations, treating fine-grained classification as a flat multi-class classification task. To overcome these limitations, we introduce a novel hierarchical multi-instance learning (HMIL) framework. By facilitating on the hierarchical alignment of inherent relationships between different hierarchy of labels at instance and bag level, our approach provides a more structured and informative learning process. Specifically, HMIL incorporates a class-wise attention mechanism that aligns hierarchical information at both the instance and bag levels. Furthermore, we introduce supervised contrastive learning to enhance the discriminative capability for fine-grained classification and a curriculum-based dynamic weighting module to adaptively balance the hierarchical feature during training. Extensive experiments on our large-scale cytology cervical cancer (CCC) dataset and two public histology datasets, BRACS and PANDA, demonstrate the state-of-the-art class-wise and overall performance of our HMIL framework. Our source code is available at https://github.com/ChengJin-git/HMIL.
This report outlines Team Seq2Cure's deep learning approach for the Capsule Vision 2024 Challenge, leveraging an ensemble of convolutional neural networks (CNNs) and transformer-based architectures for multi-class abnormality classification in video capsule endoscopy frames. The dataset comprised over 50,000 frames from three public sources and one private dataset, labeled across 10 abnormality classes. To overcome the limitations of traditional CNNs in capturing global context, we integrated CNN and transformer models within a multi-model ensemble. Our approach achieved a balanced accuracy of 86.34 percent and a mean AUC-ROC score of 0.9908 on the validation set, earning our submission 5th place in the challenge. Code is available at http://github.com/arnavs04/capsule-vision-2024 .
Prompt-based fine-tuning has become an essential method for eliciting information encoded in pre-trained language models for a variety of tasks, including text classification. For multi-class classification tasks, prompt-based fine-tuning under low-resource scenarios has resulted in performance levels comparable to those of fully fine-tuning methods. Previous studies have used crafted prompt templates and verbalizers, mapping from the label terms space to the class space, to solve the classification problem as a masked language modeling task. However, cross-domain and fine-grained prompt-based fine-tuning with an automatically enriched verbalizer remains unexplored, mainly due to the difficulty and costs of manually selecting domain label terms for the verbalizer, which requires humans with domain expertise. To address this challenge, we introduce SciPrompt, a framework designed to automatically retrieve scientific topic-related terms for low-resource text classification tasks. To this end, we select semantically correlated and domain-specific label terms within the context of scientific literature for verbalizer augmentation. Furthermore, we propose a new verbalization strategy that uses correlation scores as additional weights to enhance the prediction performance of the language model during model tuning. Our method outperforms state-of-the-art, prompt-based fine-tuning methods on scientific text classification tasks under few and zero-shot settings, especially in classifying fine-grained and emerging scientific topics.