Pre-training foundation models has become the de-facto procedure for deep learning approaches, yet its application remains limited in the geological studies, where in needs of the model transferability to break the shackle of data scarcity. Here we target on the X-ray fluorescence (XRF) scanning data, a standard high-resolution measurement in extensive scientific drilling projects. We propose a scalable self-supervised learner, masked autoencoders on XRF spectra (MAX), to pre-train a foundation model covering geological records from multiple regions of the Pacific and Southern Ocean. In pre-training, we find that masking a high proportion of the input spectrum (50\%) yields a nontrivial and meaningful self-supervisory task. For downstream tasks, we select the quantification of XRF spectra into two costly geochemical measurements, CaCO$_3$ and total organic carbon, due to their importance in understanding the paleo-oceanic carbon system. Our results show that MAX, requiring only one-third of the data, outperforms models without pre-training in terms of quantification accuracy. Additionally, the model's generalizability improves by more than 60\% in zero-shot tests on new materials, with explainability further ensuring its robustness. Thus, our approach offers a promising pathway to overcome data scarcity in geological discovery by leveraging the self-supervised foundation model and fast-acquired XRF scanning data.
This review gives an overview of the development of machine learning in geoscience. A thorough analysis of the co-developments of machine learning applications throughout the last 70 years relates the recent enthusiasm for machine learning to developments in geoscience. I explore the shift of kriging towards a mainstream machine learning method and the historic application of neural networks in geoscience, following the general trend of machine learning enthusiasm through the decades. Furthermore, this chapter explores the shift from mathematical fundamentals and knowledge in software development towards skills in model validation, applied statistics, and integrated subject matter expertise. The review is interspersed with code examples to complement the theoretical foundations and illustrate model validation and machine learning explainability for science. The scope of this review includes various shallow machine learning methods, e.g. Decision Trees, Random Forests, Support-Vector Machines, and Gaussian Processes, as well as, deep neural networks, including feed-forward neural networks, convolutional neural networks, recurrent neural networks and generative adversarial networks. Regarding geoscience, the review has a bias towards geophysics but aims to strike a balance with geochemistry, geostatistics, and geology, however excludes remote sensing, as this would exceed the scope. In general, I aim to provide context for the recent enthusiasm surrounding deep learning with respect to research, hardware, and software developments that enable successful application of shallow and deep machine learning in all disciplines of Earth science.