Prior natural language datasets for data visualization have focused on tasks such as visualization literacy assessment, insight generation, and visualization generation from natural language instructions. These studies often rely on controlled setups with purpose-built visualizations and artificially constructed questions. As a result, they tend to prioritize the interpretation of visualizations, focusing on decoding visualizations rather than understanding their encoding. In this paper, we present a new dataset and methodology for probing visualization design rationale through natural language. We leverage a unique source of real-world visualizations and natural language narratives: literate visualization notebooks created by students as part of a data visualization course. These notebooks combine visual artifacts with design exposition, in which students make explicit the rationale behind their design decisions. We also use large language models (LLMs) to generate and categorize question-answer-rationale triples from the narratives and articulations in the notebooks. We then carefully validate the triples and curate a dataset that captures and distills the visualization design choices and corresponding rationales of the students.
Data visualization generation using Large Language Models (LLMs) has shown promising results but often produces suboptimal visualizations that require human intervention for improvement. In this work, we introduce VIS-Shepherd, a specialized Multimodal Large Language Model (MLLM)-based critic to evaluate and provide feedback for LLM-generated data visualizations. At the core of our approach is a framework to construct a high-quality visualization critique dataset, where we collect human-created visualization instances, synthesize corresponding LLM-generated instances, and construct high-quality critiques. We conduct both model-based automatic evaluation and human preference studies to evaluate the effectiveness of our approach. Our experiments show that even small (7B parameters) open-source MLLM models achieve substantial performance gains by leveraging our high-quality visualization critique dataset, reaching levels comparable to much larger open-source or even proprietary models. Our work demonstrates significant potential for MLLM-based automated visualization critique and indicates promising directions for enhancing LLM-based data visualization generation. Our project page: https://github.com/bopan3/VIS-Shepherd.
The development of science has been transforming man's view towards nature for centuries. Observing structures and patterns in an effective approach to discover regularities from data is a key step toward theory-building. With increasingly complex data being obtained, revealing regularities systematically has become a challenge. Correlation is a most commonly-used and effective approach to describe regularities in data, yet for complex patterns, spatial inhomogeneity and complexity can often undermine the correlations. We present an algorithm to derive maps representing the type and degree of correlations, by taking the two-fold symmetry of the correlation vector into full account using the Stokes parameter. The method allows for a spatially resolved view of the nature and strength of correlations between physical quantities. In the correlation view, a region can often be separated into different subregions with different types of correlations. Subregions correspond to physical regimes for physical systems, or climate zones for climate maps. The simplicity of the method makes it widely applicable to a variety of data, where the correlation-based approach makes the map particularly useful in revealing regularities in physical systems and alike. As a new and efficient approach to represent data, the method should facilitate the development of new computational approaches to regularity discovery.
OLAF (Open Life Science Analysis Framework) is an open-source platform that enables researchers to perform bioinformatics analyses using natural language. By combining large language models (LLMs) with a modular agent-pipe-router architecture, OLAF generates and executes bioinformatics code on real scientific data, including formats like .h5ad. The system includes an Angular front end and a Python/Firebase backend, allowing users to run analyses such as single-cell RNA-seq workflows, gene annotation, and data visualization through a simple web interface. Unlike general-purpose AI tools, OLAF integrates code execution, data handling, and scientific libraries in a reproducible, user-friendly environment. It is designed to lower the barrier to computational biology for non-programmers and support transparent, AI-powered life science research.
In recent years, the rapid development of large reasoning models has resulted in the saturation of existing benchmarks for evaluating mathematical reasoning, highlighting the urgent need for more challenging and rigorous evaluation frameworks. To address this gap, we introduce OlymMATH, a novel Olympiad-level mathematical benchmark, designed to rigorously test the complex reasoning capabilities of LLMs. OlymMATH features 200 meticulously curated problems, each manually verified and available in parallel English and Chinese versions. The problems are systematically organized into two distinct difficulty tiers: (1) AIME-level problems (easy) that establish a baseline for mathematical reasoning assessment, and (2) significantly more challenging problems (hard) designed to push the boundaries of current state-of-the-art models. In our benchmark, these problems span four core mathematical fields, each including a verifiable numerical solution to enable objective, rule-based evaluation. Empirical results underscore the significant challenge presented by OlymMATH, with state-of-the-art models including DeepSeek-R1, OpenAI's o3-mini and Gemini 2.5 Pro Exp demonstrating notably limited accuracy on the hard subset. Furthermore, the benchmark facilitates comprehensive bilingual assessment of mathematical reasoning abilities-a critical dimension that remains largely unaddressed in mainstream mathematical reasoning benchmarks. We release the benchmark, evaluation code, detailed results and a data visualization tool at https://github.com/RUCAIBox/OlymMATH.
Natural Language to Visualization (NL2Vis) seeks to convert natural-language descriptions into visual representations of given tables, empowering users to derive insights from large-scale data. Recent advancements in Large Language Models (LLMs) show promise in automating code generation to transform tabular data into accessible visualizations. However, they often struggle with complex queries that require reasoning across multiple tables. To address this limitation, we propose a collaborative agent workflow, termed nvAgent, for NL2Vis. Specifically, nvAgent comprises three agents: a processor agent for database processing and context filtering, a composer agent for planning visualization generation, and a validator agent for code translation and output verification. Comprehensive evaluations on the new VisEval benchmark demonstrate that nvAgent consistently surpasses state-of-the-art baselines, achieving a 7.88% improvement in single-table and a 9.23% improvement in multi-table scenarios. Qualitative analyses further highlight that nvAgent maintains nearly a 20% performance margin over previous models, underscoring its capacity to produce high-quality visual representations from complex, heterogeneous data sources.
Large language models (LLMs) have facilitated the generation of high-quality, cost-effective synthetic data for developing downstream models and conducting statistical analyses in various domains. However, the increased reliance on synthetic data may pose potential negative impacts. Numerous studies have demonstrated that LLM-generated synthetic data can perpetuate and even amplify societal biases and stereotypes, and produce erroneous outputs known as ``hallucinations'' that deviate from factual knowledge. In this paper, we aim to audit artifacts, such as classifiers, generators, or statistical plots, to identify those trained on or derived from synthetic data and raise user awareness, thereby reducing unexpected consequences and risks in downstream applications. To this end, we take the first step to introduce synthetic artifact auditing to assess whether a given artifact is derived from LLM-generated synthetic data. We then propose an auditing framework with three methods including metric-based auditing, tuning-based auditing, and classification-based auditing. These methods operate without requiring the artifact owner to disclose proprietary training details. We evaluate our auditing framework on three text classification tasks, two text summarization tasks, and two data visualization tasks across three training scenarios. Our evaluation demonstrates the effectiveness of all proposed auditing methods across all these tasks. For instance, black-box metric-based auditing can achieve an average accuracy of $0.868 \pm 0.071$ for auditing classifiers and $0.880 \pm 0.052$ for auditing generators using only 200 random queries across three scenarios. We hope our research will enhance model transparency and regulatory compliance, ensuring the ethical and responsible use of synthetic data.
Machine learning algorithms are increasingly being applied to fault detection and diagnosis (FDD) in chemical processes. However, existing data-driven FDD platforms often lack interpretability for process operators and struggle to identify root causes of previously unseen faults. This paper presents FaultExplainer, an interactive tool designed to improve fault detection, diagnosis, and explanation in the Tennessee Eastman Process (TEP). FaultExplainer integrates real-time sensor data visualization, Principal Component Analysis (PCA)-based fault detection, and identification of top contributing variables within an interactive user interface powered by large language models (LLMs). We evaluate the LLMs' reasoning capabilities in two scenarios: one where historical root causes are provided, and one where they are not to mimic the challenge of previously unseen faults. Experimental results using GPT-4o and o1-preview models demonstrate the system's strengths in generating plausible and actionable explanations, while also highlighting its limitations, including reliance on PCA-selected features and occasional hallucinations.
Exploratory data analysis (EDA), coupled with SQL, is essential for data analysts involved in data exploration and analysis. However, data analysts often encounter two primary challenges: (1) the need to craft SQL queries skillfully, and (2) the requirement to generate suitable visualization types that enhance the interpretation of query results. Due to its significance, substantial research efforts have been made to explore different approaches to address these challenges, including leveraging large language models (LLMs). However, existing methods fail to meet real-world data exploration requirements primarily due to (1) complex database schema; (2) unclear user intent; (3) limited cross-domain generalization capability; and (4) insufficient end-to-end text-to-visualization capability. This paper presents TiInsight, an automated SQL-based cross-domain exploratory data analysis system. First, we propose hierarchical data context (i.e., HDC), which leverages LLMs to summarize the contexts related to the database schema, which is crucial for open-world EDA systems to generalize across data domains. Second, the EDA system is divided into four components (i.e., stages): HDC generation, question clarification and decomposition, text-to-SQL generation (i.e., TiSQL), and data visualization (i.e., TiChart). Finally, we implemented an end-to-end EDA system with a user-friendly GUI interface in the production environment at PingCAP. We have also open-sourced all APIs of TiInsight to facilitate research within the EDA community. Through extensive evaluations by a real-world user study, we demonstrate that TiInsight offers remarkable performance compared to human experts. Specifically, TiSQL achieves an execution accuracy of 86.3% on the Spider dataset using GPT-4. It also demonstrates state-of-the-art performance on the Bird dataset.
We propose a new method for data visualization based on attraction-repulsion swarming (ARS) dynamics, which we call ARS visualization. ARS is a generalized framework that is based on viewing the t-distributed stochastic neighbor embedding (t-SNE) visualization technique as a swarm of interacting agents driven by attraction and repulsion. Motivated by recent developments in swarming, we modify the t-SNE dynamics to include a normalization by the \emph{total influence}, which results in better posed dynamics in which we can use a data size independent time step (of $h=1$) and a simple iteration, without the need for the array of optimization tricks employed in t-SNE. ARS also includes the ability to separately tune the attraction and repulsion kernels, which gives the user control over the tightness within clusters and the spacing between them in the visualization. In contrast with t-SNE, our proposed ARS data visualization method is not gradient descent on the Kullback-Leibler divergence, and can be viewed solely as an interacting particle system driven by attraction and repulsion forces. We provide theoretical results illustrating how the choice of interaction kernel affects the dynamics, and experimental results to validate our method and compare to t-SNE on the MNIST and Cifar-10 data sets.
Visualization of multidimensional, categorical data is a common challenge across scientific areas and, in particular, the life sciences. The goal is to create a comprehensive overview of the underlying data which allows to assess multiple variables intuitively. One application where such visualizations are particularly useful is pathway analysis, where we check for dysregulation in known biological regulatory mechanisms and functions across multiple conditions. Here, we propose a new visualization approach that codes such data in a comprehensive and intuitive representation: Dice plots visualize up to four distinct categorical classes in a single view that consist of multiple elements resembling the faces of dice, whereas domino plots add an additional layer of information for binary comparison. The code is available as the diceplot R package, as pydiceplot on pip and at https://github.com/maflot.
Visualizing high-dimensional datasets through a generalized embedding has been a challenge for a long time. Several methods have shown up for the same, but still, they have not been able to generate a generalized embedding, which not only can reveal the hidden patterns present in the data but also generate realistic high-dimensional samples from it. Motivated by this aspect, in this study, a novel generative model, called G-NeuroDAVIS, has been developed, which is capable of visualizing high-dimensional data through a generalized embedding, and thereby generating new samples. The model leverages advanced generative techniques to produce high-quality embedding that captures the underlying structure of the data more effectively than existing methods. G-NeuroDAVIS can be trained in both supervised and unsupervised settings. We rigorously evaluated our model through a series of experiments, demonstrating superior performance in classification tasks, which highlights the robustness of the learned representations. Furthermore, the conditional sample generation capability of the model has been described through qualitative assessments, revealing a marked improvement in generating realistic and diverse samples. G-NeuroDAVIS has outperformed the Variational Autoencoder (VAE) significantly in multiple key aspects, including embedding quality, classification performance, and sample generation capability. These results underscore the potential of our generative model to serve as a powerful tool in various applications requiring high-quality data generation and representation learning.
Large language models (LLMs) have demonstrated strong capabilities across various language tasks, notably through instruction-tuning methods. However, LLMs face challenges in visualizing complex, real-world data through charts and plots. Firstly, existing datasets rarely cover a full range of chart types, such as 3D, volumetric, and gridded charts. Secondly, supervised fine-tuning methods do not fully leverage the intricate relationships within rich datasets, including text, code, and figures. To address these challenges, we propose a hierarchical pipeline and a new dataset for chart generation. Our dataset, Text2Chart31, includes 31 unique plot types referring to the Matplotlib library, with 11.1K tuples of descriptions, code, data tables, and plots. Moreover, we introduce a reinforcement learning-based instruction tuning technique for chart generation tasks without requiring human feedback. Our experiments show that this approach significantly enhances the model performance, enabling smaller models to outperform larger open-source models and be comparable to state-of-the-art proprietary models in data visualization tasks. We make the code and dataset available at https://github.com/fatemehpesaran310/Text2Chart31.
Imaging features of knee articular cartilage have been shown to be potential imaging biomarkers for knee osteoarthritis. Despite recent methodological advancements in image analysis techniques like image segmentation, registration, and domain-specific image computing algorithms, only a few works focus on building fully automated pipelines for imaging feature extraction. In this study, we developed a deep-learning-based medical image analysis application for knee cartilage morphometrics, CartiMorph Toolbox (CMT). We proposed a 2-stage joint template learning and registration network, CMT-reg. We trained the model using the OAI-ZIB dataset and assessed its performance in template-to-image registration. The CMT-reg demonstrated competitive results compared to other state-of-the-art models. We integrated the proposed model into an automated pipeline for the quantification of cartilage shape and lesion (full-thickness cartilage loss, specifically). The toolbox provides a comprehensive, user-friendly solution for medical image analysis and data visualization. The software and models are available at https://github.com/YongchengYAO/CMT-AMAI24paper .
Charts are widely used for data visualization across various fields, including education, research, and business. Chart Question Answering (CQA) is an emerging task focused on the automatic interpretation and reasoning of data presented in charts. However, chart images are inherently difficult to interpret, and chart-related questions often involve complex logical and numerical reasoning, which hinders the performance of existing models. This paper introduces VProChart, a novel framework designed to address these challenges in CQA by integrating a lightweight Visual Perception Alignment Agent (VPAgent) and a Programmatic Solution Reasoning approach. VPAgent aligns and models chart elements based on principles of human visual perception, enhancing the understanding of chart context. The Programmatic Solution Reasoning approach leverages large language models (LLMs) to transform natural language reasoning questions into structured solution programs, facilitating precise numerical and logical reasoning. Extensive experiments on benchmark datasets such as ChartQA and PlotQA demonstrate that VProChart significantly outperforms existing methods, highlighting its capability in understanding and reasoning with charts.
Data visualization (DV) is the fundamental and premise tool to improve the efficiency in conveying the insights behind the big data, which has been widely accepted in existing data-driven world. Task automation in DV, such as converting natural language queries to visualizations (i.e., text-to-vis), generating explanations from visualizations (i.e., vis-to-text), answering DV-related questions in free form (i.e. FeVisQA), and explicating tabular data (i.e., table-to-text), is vital for advancing the field. Despite their potential, the application of pre-trained language models (PLMs) like T5 and BERT in DV has been limited by high costs and challenges in handling cross-modal information, leading to few studies on PLMs for DV. We introduce DataVisT5, a novel PLM tailored for DV that enhances the T5 architecture through a hybrid objective pre-training and multi-task fine-tuning strategy, integrating text and DV datasets to effectively interpret cross-modal semantics. Extensive evaluations on public datasets show that DataVisT5 consistently outperforms current state-of-the-art models on various DV-related tasks. We anticipate that DataVisT5 will not only inspire further research on vertical PLMs but also expand the range of applications for PLMs.
We present factgenie: a framework for annotating and visualizing word spans in textual model outputs. Annotations can capture various span-based phenomena such as semantic inaccuracies or irrelevant text. With factgenie, the annotations can be collected both from human crowdworkers and large language models. Our framework consists of a web interface for data visualization and gathering text annotations, powered by an easily extensible codebase.
This work introduces IsUMap, a novel manifold learning technique that enhances data representation by integrating aspects of UMAP and Isomap with Vietoris-Rips filtrations. We present a systematic and detailed construction of a metric representation for locally distorted metric spaces that captures complex data structures more accurately than the previous schemes. Our approach addresses limitations in existing methods by accommodating non-uniform data distributions and intricate local geometries. We validate its performance through extensive experiments on examples of various geometric objects and benchmark real-world datasets, demonstrating significant improvements in representation quality.
Automatically generating data visualizations in response to human utterances on datasets necessitates a deep semantic understanding of the data utterance, including implicit and explicit references to data attributes, visualization tasks, and necessary data preparation steps. Natural Language Interfaces (NLIs) for data visualization have explored ways to infer such information, yet challenges persist due to inherent uncertainty in human speech. Recent advances in Large Language Models (LLMs) provide an avenue to address these challenges, but their ability to extract the relevant semantic information remains unexplored. In this study, we evaluate four publicly available LLMs (GPT-4, Gemini-Pro, Llama3, and Mixtral), investigating their ability to comprehend utterances even in the presence of uncertainty and identify the relevant data context and visual tasks. Our findings reveal that LLMs are sensitive to uncertainties in utterances. Despite this sensitivity, they are able to extract the relevant data context. However, LLMs struggle with inferring visualization tasks. Based on these results, we highlight future research directions on using LLMs for visualization generation.
Translating natural language to visualization (NL2VIS) has shown great promise for visual data analysis, but it remains a challenging task that requires multiple low-level implementations, such as natural language processing and visualization design. Recent advancements in pre-trained large language models (LLMs) are opening new avenues for generating visualizations from natural language. However, the lack of a comprehensive and reliable benchmark hinders our understanding of LLMs' capabilities in visualization generation. In this paper, we address this gap by proposing a new NL2VIS benchmark called VisEval. Firstly, we introduce a high-quality and large-scale dataset. This dataset includes 2,524 representative queries covering 146 databases, paired with accurately labeled ground truths. Secondly, we advocate for a comprehensive automated evaluation methodology covering multiple dimensions, including validity, legality, and readability. By systematically scanning for potential issues with a number of heterogeneous checkers, VisEval provides reliable and trustworthy evaluation outcomes. We run VisEval on a series of state-of-the-art LLMs. Our evaluation reveals prevalent challenges and delivers essential insights for future advancements.