Remote sensing enables a wide range of critical applications such as land cover and land use mapping, crop yield prediction, and environmental monitoring. Advances in satellite technology have expanded remote sensing datasets, yet high-performance segmentation models remain dependent on extensive labeled data, challenged by annotation scarcity and variability across sensors, illumination, and geography. Domain adaptation offers a promising solution to improve model generalization. This paper introduces a domain generalization approach to leveraging emerging geospatial foundation models by combining soft-alignment pseudo-labeling with source-to-target generative pre-training. We further provide new mathematical insights into MAE-based generative learning for domain-invariant feature learning. Experiments with hyperspectral and multispectral remote sensing datasets confirm our method's effectiveness in enhancing adaptability and segmentation.
Accurate and precise crop yield prediction is invaluable for decision making at both farm levels and regional levels. To make yield prediction, crop models are widely used for their capability to simulate hypothetical scenarios. While accuracy and precision of yield prediction critically depend on weather inputs to simulations, surprisingly little attention has been paid to preparing weather inputs. We propose a new method to construct generative models for long-term weather forecasts and ultimately improve crop yield prediction. We demonstrate use of the method in two representative scenarios -- single-year production of wheat, barley and canola and three-year production using rotations of these crops. Results show significant improvement from the conventional method, measured in terms of mean and standard deviation of prediction errors. Our method outperformed the conventional method in every one of 18 metrics for the first scenario and in 29 out of 36 metrics for the second scenario. For individual crop modellers to start applying the method to their problems, technical details are carefully explained, and all the code, trained PyTorch models, APSIM simulation files and result data are made available.
Accurate crop yield prediction is of utmost importance for informed decision-making in agriculture, aiding farmers, and industry stakeholders. However, this task is complex and depends on multiple factors, such as environmental conditions, soil properties, and management practices. Combining heterogeneous data views poses a fusion challenge, like identifying the view-specific contribution to the predictive task. We present a novel multi-view learning approach to predict crop yield for different crops (soybean, wheat, rapeseed) and regions (Argentina, Uruguay, and Germany). Our multi-view input data includes multi-spectral optical images from Sentinel-2 satellites and weather data as dynamic features during the crop growing season, complemented by static features like soil properties and topographic information. To effectively fuse the data, we introduce a Multi-view Gated Fusion (MVGF) model, comprising dedicated view-encoders and a Gated Unit (GU) module. The view-encoders handle the heterogeneity of data sources with varying temporal resolutions by learning a view-specific representation. These representations are adaptively fused via a weighted sum. The fusion weights are computed for each sample by the GU using a concatenation of the view-representations. The MVGF model is trained at sub-field level with 10 m resolution pixels. Our evaluations show that the MVGF outperforms conventional models on the same task, achieving the best results by incorporating all the data sources, unlike the usual fusion results in the literature. For Argentina, the MVGF model achieves an R2 value of 0.68 at sub-field yield prediction, while at field level evaluation (comparing field averages), it reaches around 0.80 across different countries. The GU module learned different weights based on the country and crop-type, aligning with the variable significance of each data source to the prediction task.
Crop yield prediction has been modeled on the assumption that there is no interaction between weather and soil variables. However, this paper argues that an interaction exists, and it can be finely modelled using the Kendall Correlation coefficient. Given the nonlinearity of the interaction between weather and soil variables, a deep neural network regressor (DNNR) is carefully designed with consideration to the depth, number of neurons of the hidden layers, and the hyperparameters with their optimizations. Additionally, a new metric, the average of absolute root squared error (ARSE) is proposed to combine the strengths of root mean square error (RMSE) and mean absolute error (MAE). With the ARSE metric, the proposed DNNR(s), optimised random forest regressor (RFR) and the extreme gradient boosting regressor (XGBR) achieved impressively small yield errors, 0.0172 t/ha, and 0.0243 t/ha, 0.0001 t/ha, and 0.001 t/ha, respectively. However, the DNNR(s), with changes to the explanatory variables to ensure generalizability to unforeseen data, DNNR(s) performed best. Further analysis reveals that a strong interaction does exist between weather and soil variables. Precisely, yield is observed to increase when precipitation is reduced and silt increased, and vice-versa. However, the degree of decrease or increase is not quantified in this paper. Contrary to existing yield models targeted towards agricultural policies and global food security, the goal of the proposed corn yield model is to empower the smallholder farmer to farm smartly and intelligently, thus the prediction model is integrated into a mobile application that includes education, and a farmer-to-market access module.
The availability of well-curated datasets has driven the success of Machine Learning (ML) models. Despite greater access to earth observation data in agriculture, there is a scarcity of curated and labelled datasets, which limits the potential of its use in training ML models for remote sensing (RS) in agriculture. To this end, we introduce a first-of-its-kind dataset called SICKLE, which constitutes a time-series of multi-resolution imagery from 3 distinct satellites: Landsat-8, Sentinel-1 and Sentinel-2. Our dataset constitutes multi-spectral, thermal and microwave sensors during January 2018 - March 2021 period. We construct each temporal sequence by considering the cropping practices followed by farmers primarily engaged in paddy cultivation in the Cauvery Delta region of Tamil Nadu, India; and annotate the corresponding imagery with key cropping parameters at multiple resolutions (i.e. 3m, 10m and 30m). Our dataset comprises 2,370 season-wise samples from 388 unique plots, having an average size of 0.38 acres, for classifying 21 crop types across 4 districts in the Delta, which amounts to approximately 209,000 satellite images. Out of the 2,370 samples, 351 paddy samples from 145 plots are annotated with multiple crop parameters; such as the variety of paddy, its growing season and productivity in terms of per-acre yields. Ours is also one among the first studies that consider the growing season activities pertinent to crop phenology (spans sowing, transplanting and harvesting dates) as parameters of interest. We benchmark SICKLE on three tasks: crop type, crop phenology (sowing, transplanting, harvesting), and yield prediction
Precise crop yield prediction provides valuable information for agricultural planning and decision-making processes. However, timely predicting crop yields remains challenging as crop growth is sensitive to growing season weather variation and climate change. In this work, we develop a deep learning-based solution, namely Multi-Modal Spatial-Temporal Vision Transformer (MMST-ViT), for predicting crop yields at the county level across the United States, by considering the effects of short-term meteorological variations during the growing season and the long-term climate change on crops. Specifically, our MMST-ViT consists of a Multi-Modal Transformer, a Spatial Transformer, and a Temporal Transformer. The Multi-Modal Transformer leverages both visual remote sensing data and short-term meteorological data for modeling the effect of growing season weather variations on crop growth. The Spatial Transformer learns the high-resolution spatial dependency among counties for accurate agricultural tracking. The Temporal Transformer captures the long-range temporal dependency for learning the impact of long-term climate change on crops. Meanwhile, we also devise a novel multi-modal contrastive learning technique to pre-train our model without extensive human supervision. Hence, our MMST-ViT captures the impacts of both short-term weather variations and long-term climate change on crops by leveraging both satellite images and meteorological data. We have conducted extensive experiments on over 200 counties in the United States, with the experimental results exhibiting that our MMST-ViT outperforms its counterparts under three performance metrics of interest.
Response curves exhibit the magnitude of the response of a sensitive system to a varying stimulus. However, response of such systems may be sensitive to multiple stimuli (i.e., input features) that are not necessarily independent. As a consequence, the shape of response curves generated for a selected input feature (referred to as "active feature") might depend on the values of the other input features (referred to as "passive features"). In this work, we consider the case of systems whose response is approximated using regression neural networks. We propose to use counterfactual explanations (CFEs) for the identification of the features with the highest relevance on the shape of response curves generated by neural network black boxes. CFEs are generated by a genetic algorithm-based approach that solves a multi-objective optimization problem. In particular, given a response curve generated for an active feature, a CFE finds the minimum combination of passive features that need to be modified to alter the shape of the response curve. We tested our method on a synthetic dataset with 1-D inputs and two crop yield prediction datasets with 2-D inputs. The relevance ranking of features and feature combinations obtained on the synthetic dataset coincided with the analysis of the equation that was used to generate the problem. Results obtained on the yield prediction datasets revealed that the impact on fertilizer responsivity of passive features depends on the terrain characteristics of each field.
Climate change is posing new challenges to crop-related concerns including food insecurity, supply stability and economic planning. As one of the central challenges, crop yield prediction has become a pressing task in the machine learning field. Despite its importance, the prediction task is exceptionally complicated since crop yields depend on various factors such as weather, land surface, soil quality as well as their interactions. In recent years, machine learning models have been successfully applied in this domain. However, these models either restrict their tasks to a relatively small region, or only study over a single or few years, which makes them hard to generalize spatially and temporally. In this paper, we introduce a novel graph-based recurrent neural network for crop yield prediction, to incorporate both geographical and temporal knowledge in the model, and further boost predictive power. Our method is trained, validated, and tested on over 2000 counties from 41 states in the US mainland, covering years from 1981 to 2019. As far as we know, this is the first machine learning method that embeds geographical knowledge in crop yield prediction and predicts the crop yields at county level nationwide. We also laid a solid foundation for the comparison with other machine learning baselines by applying well-known linear models, tree-based models, deep learning methods and comparing their performance. Experiments show that our proposed method consistently outperforms the existing state-of-the-art methods on various metrics, validating the effectiveness of geospatial and temporal information.
We present a fully automated model for in-season crop yield prediction, designed to work where there is a dearth of sub-national "ground truth" information. Our approach relies primarily on satellite data and is characterized by careful feature engineering combined with a simple regression model. As such, it can work almost anywhere in the world. Applying it to 10 different crop-country pairs (5 cereals -- corn, wheat, sorghum, barley and millet, in 2 countries -- Ethiopia and Kenya), we achieve RMSEs of 5%-10% for predictions 9 months into the year, and 7%-14% for predictions 3 months into the year. The model outputs daily forecasts for the final yield of the current year. It is trained using approximately 4 million data points for each crop-country pair. These consist of: historical country-level annual yields, crop calendars, crop cover, NDVI, temperature, rainfall, and evapotransporation.
Satellite images are snapshots of the Earth surface. We propose to forecast them. We frame Earth surface forecasting as the task of predicting satellite imagery conditioned on future weather. EarthNet2021 is a large dataset suitable for training deep neural networks on the task. It contains Sentinel 2 satellite imagery at 20m resolution, matching topography and mesoscale (1.28km) meteorological variables packaged into 32000 samples. Additionally we frame EarthNet2021 as a challenge allowing for model intercomparison. Resulting forecasts will greatly improve (>x50) over the spatial resolution found in numerical models. This allows localized impacts from extreme weather to be predicted, thus supporting downstream applications such as crop yield prediction, forest health assessments or biodiversity monitoring. Find data, code, and how to participate at www.earthnet.tech
Crop yield prediction is extremely challenging due to its dependence on multiple factors such as crop genotype, environmental factors, management practices, and their interactions. This paper presents a deep learning framework using convolutional neural networks (CNN) and recurrent neural networks (RNN) for crop yield prediction based on environmental data and management practices. The proposed CNN-RNN model, along with other popular methods such as random forest (RF), deep fully-connected neural networks (DFNN), and LASSO, was used to forecast corn and soybean yield across the entire Corn Belt (including 13 states) in the United States for years 2016, 2017, and 2018 using historical data. The new model achieved a root-mean-square-error (RMSE) 9% and 8% of their respective average yields, substantially outperforming all other methods that were tested. The CNN-RNN have three salient features that make it a potentially useful method for other crop yield prediction studies. (1) The CNN-RNN model was designed to capture the time dependencies of environmental factors and the genetic improvement of seeds over time without having their genotype information. (2) The model demonstrated the capability to generalize the yield prediction to untested environments without significant drop in the prediction accuracy. (3) Coupled with the backpropagation method, the model could reveal the extent to which weather conditions, accuracy of weather predictions, soil conditions, and management practices were able to explain the variation in the crop yields.
Crop yield is a highly complex trait determined by multiple factors such as genotype, environment, and their interactions. Accurate yield prediction requires fundamental understanding of the functional relationship between yield and these interactive factors, and to reveal such relationship requires both comprehensive datasets and powerful algorithms. In the 2018 Syngenta Crop Challenge, Syngenta released several large datasets that recorded the genotype and yield performances of 2,267 maize hybrids planted in 2,247 locations between 2008 and 2016 and asked participants to predict the yield performance in 2017. As one of the winning teams, we designed a deep neural network (DNN) approach that took advantage of state-of-the-art modeling and solution techniques. Our model was found to have a superior prediction accuracy, with a root-mean-square-error (RMSE) being 12% of the average yield and 50% of the standard deviation for the validation dataset using predicted weather data. With perfect weather data, the RMSE would be reduced to 11% of the average yield and 46% of the standard deviation. We also performed feature selection based on the trained DNN model, which successfully decreased the dimension of the input space without significant drop in the prediction accuracy. Our computational results suggested that this model significantly outperformed other popular methods such as Lasso, shallow neural networks (SNN), and regression tree (RT). The results also revealed that environmental factors had a greater effect on the crop yield than genotype.