As one of the most detrimental code smells, code clones significantly increase software maintenance costs and heighten vulnerability risks, making their detection a critical challenge in software engineering. Abstract Syntax Trees (ASTs) dominate deep learning-based code clone detection due to their precise syntactic structure representation, but they inherently lack semantic depth. Recent studies address this by enriching AST-based representations with semantic graphs, such as Control Flow Graphs (CFGs) and Data Flow Graphs (DFGs). However, the effectiveness of various enriched AST-based representations and their compatibility with different graph-based machine learning techniques remains an open question, warranting further investigation to unlock their full potential in addressing the complexities of code clone detection. In this paper, we present a comprehensive empirical study to rigorously evaluate the effectiveness of AST-based hybrid graph representations in Graph Neural Network (GNN)-based code clone detection. We systematically compare various hybrid representations ((CFG, DFG, Flow-Augmented ASTs (FA-AST)) across multiple GNN architectures. Our experiments reveal that hybrid representations impact GNNs differently: while AST+CFG+DFG consistently enhances accuracy for convolution- and attention-based models (Graph Convolutional Networks (GCN), Graph Attention Networks (GAT)), FA-AST frequently introduces structural complexity that harms performance. Notably, GMN outperforms others even with standard AST representations, highlighting its superior cross-code similarity detection and reducing the need for enriched structures.
Detecting and tracking code clones can ease various software development and maintenance tasks when changes in a code fragment should be propagated over all its copies. Several deep learning-based clone detection models have appeared in the literature for detecting syntactic and semantic clones, widely evaluated with the BigCloneBench dataset. However, class imbalance and the small number of semantic clones make BigCloneBench less ideal for interpreting model performance. Researchers also use other datasets such as GoogleCodeJam, OJClone, and SemanticCloneBench to understand model generalizability. To overcome the limitations of existing datasets, the GPT-assisted semantic and cross-language clone dataset GPTCloneBench has been released. However, how these models compare across datasets remains unclear. In this paper, we propose a multi-step evaluation approach for five state-of-the-art clone detection models leveraging existing benchmark datasets, including GPTCloneBench, and using mutation operators to study model ability. Specifically, we examine three highly-performing single-language models (ASTNN, GMN, CodeBERT) on BigCloneBench, SemanticCloneBench, and GPTCloneBench, testing their robustness with mutation operations. Additionally, we compare them against cross-language models (C4, CLCDSA) known for detecting semantic clones. While single-language models show high F1 scores for BigCloneBench, their performance on SemanticCloneBench varies (up to 20%). Interestingly, the cross-language model (C4) shows superior performance (around 7%) on SemanticCloneBench over other models and performs similarly on BigCloneBench and GPTCloneBench. On mutation-based datasets, C4 has more robust performance (less than 1% difference) compared to single-language models, which show high variability.
Assessing the degree of similarity of code fragments is crucial for ensuring software quality, but it remains challenging due to the need to capture the deeper semantic aspects of code. Traditional syntactic methods often fail to identify these connections. Recent advancements have addressed this challenge, though they frequently sacrifice interpretability. To improve this, we present an approach aiming to improve the transparency of the similarity assessment by using GraphCodeBERT, which enables the identification of semantic relationships between code fragments. This approach identifies similar code fragments and clarifies the reasons behind that identification, helping developers better understand and trust the results. The source code for our implementation is available at https://www.github.com/jorge-martinez-gil/graphcodebert-interpretability.
With the involvement of multiple programming languages in modern software development, cross-lingual code clone detection has gained traction within the software engineering community. Numerous studies have explored this topic, proposing various promising approaches. Inspired by the significant advances in machine learning in recent years, particularly Large Language Models (LLMs), which have demonstrated their ability to tackle various tasks, this paper revisits cross-lingual code clone detection. We evaluate the performance of five (05) LLMs and eight prompts (08) for the identification of cross-lingual code clones. Additionally, we compare these results against two baseline methods. Finally, we evaluate a pre-trained embedding model to assess the effectiveness of the generated representations for classifying clone and non-clone pairs. The studies involving LLMs and Embedding models are evaluated using two widely used cross-lingual datasets, XLCoST and CodeNet. Our results show that LLMs can achieve high F1 scores, up to 0.99, for straightforward programming examples. However, they not only perform less well on programs associated with complex programming challenges but also do not necessarily understand the meaning of "code clones" in a cross-lingual setting. We show that embedding models used to represent code fragments from different programming languages in the same representation space enable the training of a basic classifier that outperforms all LLMs by ~1 and ~20 percentage points on the XLCoST and CodeNet datasets, respectively. This finding suggests that, despite the apparent capabilities of LLMs, embeddings provided by embedding models offer suitable representations to achieve state-of-the-art performance in cross-lingual code clone detection.
The capability of accurately determining code similarity is crucial in many tasks related to software development. For example, it might be essential to identify code duplicates for performing software maintenance. This research introduces a novel ensemble learning approach for code similarity assessment, combining the strengths of multiple unsupervised similarity measures. The key idea is that the strengths of a diverse set of similarity measures can complement each other and mitigate individual weaknesses, leading to improved performance. Preliminary results show that while Transformers-based CodeBERT and its variant GraphCodeBERT are undoubtedly the best option in the presence of abundant training data, in the case of specific small datasets (up to 500 samples), our ensemble achieves similar results, without prejudice to the interpretability of the resulting solution, and with a much lower associated carbon footprint due to training. The source code of this novel approach can be downloaded from https://github.com/jorge-martinez-gil/ensemble-codesim.
Code auditing ensures that the developed code adheres to standards, regulations, and copyright protection by verifying that it does not contain code from protected sources. The recent advent of Large Language Models (LLMs) as coding assistants in the software development process poses new challenges for code auditing. The dataset for training these models is mainly collected from publicly available sources. This raises the issue of intellectual property infringement as developers' codes are already included in the dataset. Therefore, auditing code developed using LLMs is challenging, as it is difficult to reliably assert if an LLM used during development has been trained on specific copyrighted codes, given that we do not have access to the training datasets of these models. Given the non-disclosure of the training datasets, traditional approaches such as code clone detection are insufficient for asserting copyright infringement. To address this challenge, we propose a new approach, TraWiC; a model-agnostic and interpretable method based on membership inference for detecting code inclusion in an LLM's training dataset. We extract syntactic and semantic identifiers unique to each program to train a classifier for detecting code inclusion. In our experiments, we observe that TraWiC is capable of detecting 83.87% of codes that were used to train an LLM. In comparison, the prevalent clone detection tool NiCad is only capable of detecting 47.64%. In addition to its remarkable performance, TraWiC has low resource overhead in contrast to pair-wise clone detection that is conducted during the auditing process of tools like CodeWhisperer reference tracker, across thousands of code snippets.
Large Language Models (LLMs) have demonstrated remarkable success in various natural language processing and software engineering tasks, such as code generation. The LLMs are mainly utilized in the prompt-based zero/few-shot paradigm to guide the model in accomplishing the task. GPT-based models are one of the popular ones studied for tasks such as code comment generation or test generation. These tasks are `generative' tasks. However, there is limited research on the usage of LLMs for `non-generative' tasks such as classification using the prompt-based paradigm. In this preliminary exploratory study, we investigated the applicability of LLMs for Code Clone Detection (CCD), a non-generative task. By building a mono-lingual and cross-lingual CCD dataset derived from CodeNet, we first investigated two different prompts using ChatGPT to detect Type-4 code clones in Java-Java and Java-Ruby pairs in a zero-shot setting. We then conducted an analysis to understand the strengths and weaknesses of ChatGPT in CCD. ChatGPT surpasses the baselines in cross-language CCD attaining an F1-score of 0.877 and achieves comparable performance to fully fine-tuned models for mono-lingual CCD, with an F1-score of 0.878. Also, the prompt and the difficulty level of the problems has an impact on the performance of ChatGPT. Finally we provide insights and future directions based on our initial analysis
Assessing similarity in source code has gained significant attention in recent years due to its importance in software engineering tasks such as clone detection and code search and recommendation. This work presents a comparative analysis of unsupervised similarity measures for identifying source code clone detection. The goal is to overview the current state-of-the-art techniques, their strengths, and weaknesses. To do that, we compile the existing unsupervised strategies and evaluate their performance on a benchmark dataset to guide software engineers in selecting appropriate methods for their specific use cases. The source code of this study is available at https://github.com/jorge-martinez-gil/codesim
Transformers, renowned for their self-attention mechanism, have achieved state-of-the-art performance across various tasks in natural language processing, computer vision, time-series modeling, etc. However, one of the challenges with deep Transformer models is the oversmoothing problem, where representations across layers converge to indistinguishable values, leading to significant performance degradation. We interpret the original self-attention as a simple graph filter and redesign it from a graph signal processing (GSP) perspective. We propose a graph-filter-based self-attention (GFSA) to learn a general yet effective one, whose complexity, however, is slightly larger than that of the original self-attention mechanism. We demonstrate that GFSA improves the performance of Transformers in various fields, including computer vision, natural language processing, graph-level tasks, speech recognition, and code classification.
Artificial intelligence (AI) has revolutionized software engineering (SE) by enhancing software development efficiency. The advent of pre-trained models (PTMs) leveraging transfer learning has significantly advanced AI for SE. However, existing PTMs that operate on individual code tokens suffer from several limitations: They are costly to train and fine-tune; and they rely heavily on labeled data for fine-tuning on task-specific datasets. In this paper, we present TransformCode, a novel framework that learns code embeddings in a contrastive learning manner. Our framework is encoder-agnostic and language-agnostic, which means that it can leverage any encoder model and handle any programming language. We also propose a novel data-augmentation technique called abstract syntax tree (AST) transformation, which applies syntactic and semantic transformations to the original code snippets, to generate more diverse and robust samples for contrastive learning. Our framework has several advantages over existing methods: (1) It is flexible and adaptable, because it can easily be extended to other downstream tasks that require code representation (such as code-clone detection and classification); (2) it is efficient and scalable, because it does not require a large model or a large amount of training data, and it can support any programming language; (3) it is not limited to unsupervised learning, but can also be applied to some supervised learning tasks by incorporating task-specific labels or objectives; and (4) it can also adjust the number of encoder parameters based on computing resources. We evaluate our framework on several code-related tasks, and demonstrate its effectiveness and superiority over the state-of-the-art methods such as SourcererCC, Code2vec, and InferCode.
Developers introduce code clones to improve programming productivity. Many existing studies have achieved impressive performance in monolingual code clone detection. However, during software development, more and more developers write semantically equivalent programs with different languages to support different platforms and help developers translate projects from one language to another. Considering that collecting cross-language parallel data, especially for low-resource languages, is expensive and time-consuming, how designing an effective cross-language model that does not rely on any parallel data is a significant problem. In this paper, we propose a novel method named ZC3 for Zero-shot Cross-language Code Clone detection. ZC3 designs the contrastive snippet prediction to form an isomorphic representation space among different programming languages. Based on this, ZC3 exploits domain-aware learning and cycle consistency learning to further constrain the model to generate representations that are aligned among different languages meanwhile are diacritical for different types of clones. To evaluate our approach, we conduct extensive experiments on four representative cross-language clone detection datasets. Experimental results show that ZC3 outperforms the state-of-the-art baselines by 67.12%, 51.39%, 14.85%, and 53.01% on the MAP score, respectively. We further investigate the representational distribution of different languages and discuss the effectiveness of our method.
Automated program analysis is a pivotal research domain in many areas of Computer Science -- Formal Methods and Artificial Intelligence, in particular. Due to the undecidability of the problem of program equivalence, comparing two programs is highly challenging. Typically, in order to compare two programs, a relation between both programs' sets of variables is required. Thus, mapping variables between two programs is useful for a panoply of tasks such as program equivalence, program analysis, program repair, and clone detection. In this work, we propose using graph neural networks (GNNs) to map the set of variables between two programs based on both programs' abstract syntax trees (ASTs). To demonstrate the strength of variable mappings, we present three use-cases of these mappings on the task of program repair to fix well-studied and recurrent bugs among novice programmers in introductory programming assignments (IPAs). Experimental results on a dataset of 4166 pairs of incorrect/correct programs show that our approach correctly maps 83% of the evaluation dataset. Moreover, our experiments show that the current state-of-the-art on program repair, greatly dependent on the programs' structure, can only repair about 72% of the incorrect programs. In contrast, our approach, which is solely based on variable mappings, can repair around 88.5%.
Code pre-trained models (CodePTMs) have recently demonstrated a solid capacity to process various software intelligence tasks, e.g., code clone detection, code translation, and code summarization. The current mainstream method that deploys these models to downstream tasks is to fine-tune them on individual tasks, which is generally costly and needs sufficient data for large models. To tackle the issue, in this paper, we present TransCoder, a unified Transferable fine-tuning strategy for Code representation learning. Inspired by human inherent skills of knowledge generalization, TransCoder drives the model to learn better code-related meta-knowledge like human programmers. Specifically, we employ a tunable prefix encoder as the meta-learner to capture cross-task and cross-language transferable knowledge, respectively. Besides, tasks with minor training sample sizes and languages with small corpus can be remarkably benefited from our approach. Extensive experiments conducted on benchmark datasets clearly demonstrate that our method can lead to superior performance on various code-related tasks and encourage mutual reinforcement. We also show that TransCoder is applicable in low-resource scenarios. Our codes are available at https://github.com/QiushiSun/TransCoder.
Semantic understanding of programs has attracted great attention in the community. Inspired by recent successes of large language models (LLMs) in natural language understanding, tremendous progress has been made by treating programming language as another sort of natural language and training LLMs on corpora of program code. However, programs are essentially different from texts after all, in a sense that they are normally heavily structured and syntax-strict. In particular, programs and their basic units (i.e., functions and subroutines) are designed to demonstrate a variety of behaviors and/or provide possible outputs, given different inputs. The relationship between inputs and possible outputs/behaviors represents the functions/subroutines and profiles the program as a whole. Therefore, we propose to incorporate such a relationship into learning, for achieving a deeper semantic understanding of programs. To obtain inputs that are representative enough to trigger the execution of most part of the code, we resort to fuzz testing and propose fuzz tuning to boost the performance of program understanding and code representation learning, given a pre-trained LLM. The effectiveness of the proposed method is verified on two program understanding tasks including code clone detection and code classification, and it outperforms current state-of-the-arts by large margins. Code is available at https://github.com/rabbitjy/FuzzTuning.
Binary code similarity detection (BCSD) is widely used in various binary analysis tasks such as vulnerability search, malware detection, clone detection, and patch analysis. Recent studies have shown that the learning-based binary code embedding models perform better than the traditional feature-based approaches. However, previous studies have not delved deeply into the key factors that affect model performance. In this paper, we design extensive ablation studies to explore these influencing factors. The experimental results have provided us with many new insights. We have made innovations in both code representation and model selection: we propose a novel rich-semantic function representation technique to ensure the model captures the intricate nuances of binary code, and we introduce the first UniLM-based binary code embedding model, named UniASM, which includes two newly designed training tasks to learn representations of binary functions. The experimental results show that UniASM outperforms the state-of-the-art (SOTA) approaches on the evaluation datasets. The average scores of Recall@1 on cross-compilers, cross-optimization-levels, and cross-obfuscations have improved by 12.7%, 8.5%, and 22.3%, respectively, compared to the best of the baseline methods. Besides, in the real-world task of known vulnerability search, UniASM outperforms all the current baselines.
Program understanding is a fundamental task in program language processing. Despite the success, existing works fail to take human behaviors as reference in understanding programs. In this paper, we consider human behaviors and propose the PGNN-EK model that consists of two main components. On the one hand, inspired by the "divide-and-conquer" reading behaviors of humans, we present a partitioning-based graph neural network model PGNN on the upgraded AST of codes. On the other hand, to characterize human behaviors of resorting to other resources to help code comprehension, we transform raw codes with external knowledge and apply pre-training techniques for information extraction. Finally, we combine the two embeddings generated from the two components to output code embeddings. We conduct extensive experiments to show the superior performance of PGNN-EK on the code summarization and code clone detection tasks. In particular, to show the generalization ability of our model, we release a new dataset that is more challenging for code clone detection and could advance the development of the community. Our codes and data are publicly available at https://github.com/RecklessRonan/PGNN-EK.
Pre-trained neural Language Models (PTLM), such as CodeBERT, are recently used in software engineering as models pre-trained on large source code corpora. Their knowledge is transferred to downstream tasks (e.g. code clone detection) via fine-tuning. In natural language processing (NLP), other alternatives for transferring the knowledge of PTLMs are explored through using adapters, compact, parameter efficient modules inserted in the layers of the PTLM. Although adapters are known to facilitate adapting to many downstream tasks compared to fine-tuning the model that require retraining all of the models' parameters -- which owes to the adapters' plug and play nature and being parameter efficient -- their usage in software engineering is not explored. Here, we explore the knowledge transfer using adapters and based on the Naturalness Hypothesis proposed by Hindle et. al \cite{hindle2016naturalness}. Thus, studying the bimodality of adapters for two tasks of cloze test and code clone detection, compared to their benchmarks from the CodeXGLUE platform. These adapters are trained using programming languages and are inserted in a PTLM that is pre-trained on English corpora (N-PTLM). Three programming languages, C/C++, Python, and Java, are studied along with extensive experiments on the best setup used for adapters. Improving the results of the N-PTLM confirms the success of the adapters in knowledge transfer to software engineering, which sometimes are in par with or exceed the results of a PTLM trained on source code; while being more efficient in terms of the number of parameters, memory usage, and inference time. Our results can open new directions to build smaller models for more software engineering tasks. We open source all the scripts and the trained adapters.
Program semantics learning is the core and fundamental for various code intelligent tasks e.g., vulnerability detection, clone detection. A considerable amount of existing works propose diverse approaches to learn the program semantics for different tasks and these works have achieved state-of-the-art performance. However, currently, a comprehensive and systematic study on evaluating different program representation techniques across diverse tasks is still missed. From this starting point, in this paper, we conduct an empirical study to evaluate different program representation techniques. Specifically, we categorize current mainstream code representation techniques into four categories i.e., Feature-based, Sequence-based, Tree-based, and Graph-based program representation technique and evaluate its performance on three diverse and popular code intelligent tasks i.e., {Code Classification}, Vulnerability Detection, and Clone Detection on the public released benchmark. We further design three {research questions (RQs)} and conduct a comprehensive analysis to investigate the performance. By the extensive experimental results, we conclude that (1) The graph-based representation is superior to the other selected techniques across these tasks. (2) Compared with the node type information used in tree-based and graph-based representations, the node textual information is more critical to learning the program semantics. (3) Different tasks require the task-specific semantics to achieve their highest performance, however combining various program semantics from different dimensions such as control dependency, data dependency can still produce promising results.
With the great success of pre-trained models, the pretrain-then-finetune paradigm has been widely adopted on downstream tasks for source code understanding. However, compared to costly training a large-scale model from scratch, how to effectively adapt pre-trained models to a new task has not been fully explored. In this paper, we propose an approach to bridge pre-trained models and code-related tasks. We exploit semantic-preserving transformation to enrich downstream data diversity, and help pre-trained models learn semantic features invariant to these semantically equivalent transformations. Further, we introduce curriculum learning to organize the transformed data in an easy-to-hard manner to fine-tune existing pre-trained models. We apply our approach to a range of pre-trained models, and they significantly outperform the state-of-the-art models on tasks for source code understanding, such as algorithm classification, code clone detection, and code search. Our experiments even show that without heavy pre-training on code data, natural language pre-trained model RoBERTa fine-tuned with our lightweight approach could outperform or rival existing code pre-trained models fine-tuned on the above tasks, such as CodeBERT and GraphCodeBERT. This finding suggests that there is still much room for improvement in code pre-trained models.
Pre-trained models for Natural Languages (NL) like BERT and GPT have been recently shown to transfer well to Programming Languages (PL) and largely benefit a broad set of code-related tasks. Despite their success, most current methods either rely on an encoder-only (or decoder-only) pre-training that is suboptimal for generation (resp. understanding) tasks or process the code snippet in the same way as NL, neglecting the special characteristics of PL such as token types. We present CodeT5, a unified pre-trained encoder-decoder Transformer model that better leverages the code semantics conveyed from the developer-assigned identifiers. Our model employs a unified framework to seamlessly support both code understanding and generation tasks and allows for multi-task learning. Besides, we propose a novel identifier-aware pre-training task that enables the model to distinguish which code tokens are identifiers and to recover them when they are masked. Furthermore, we propose to exploit the user-written code comments with a bimodal dual generation task for better NL-PL alignment. Comprehensive experiments show that CodeT5 significantly outperforms prior methods on understanding tasks such as code defect detection and clone detection, and generation tasks across various directions including PL-NL, NL-PL, and PL-PL. Further analysis reveals that our model can better capture semantic information from code. Our code and pre-trained models are released at https: //github.com/salesforce/CodeT5 .