Graph convolutional network (GCN) provides a powerful means for graph-based semi-supervised tasks. However, as a localized first-order approximation of spectral graph convolution, the classic GCN can not take full advantage of unlabeled data, especially when the unlabeled node is far from labeled ones. To capitalize on the information from unlabeled nodes to boost the training for GCN, we propose a novel framework named Self-Ensembling GCN (SEGCN), which marries GCN with Mean Teacher - another powerful model in semi-supervised learning. SEGCN contains a student model and a teacher model. As a student, it not only learns to correctly classify the labeled nodes, but also tries to be consistent with the teacher on unlabeled nodes in more challenging situations, such as a high dropout rate and graph collapse. As a teacher, it averages the student model weights and generates more accurate predictions to lead the student. In such a mutual-promoting process, both labeled and unlabeled samples can be fully utilized for backpropagating effective gradients to train GCN. In three article classification tasks, i.e. Citeseer, Cora and Pubmed, we validate that the proposed method matches the state of the arts in the classification accuracy.
Statistical characteristics of deep network representations, such as sparsity and correlation, are known to be relevant to the performance and interpretability of deep learning. When a statistical characteristic is desired, often an adequate regularizer can be designed and applied during the training phase. Typically, such a regularizer aims to manipulate a statistical characteristic over all classes together. For classification tasks, however, it might be advantageous to enforce the desired characteristic per class such that different classes can be better distinguished. Motivated by the idea, we design two class-wise regularizers that explicitly utilize class information: class-wise Covariance Regularizer (cw-CR) and class-wise Variance Regularizer (cw-VR). cw-CR targets to reduce the covariance of representations calculated from the same class samples for encouraging feature independence. cw-VR is similar, but variance instead of covariance is targeted to improve feature compactness. For the sake of completeness, their counterparts without using class information, Covariance Regularizer (CR) and Variance Regularizer (VR), are considered together. The four regularizers are conceptually simple and computationally very efficient, and the visualization shows that the regularizers indeed perform distinct representation shaping. In terms of classification performance, significant improvements over the baseline and L1/L2 weight regularization methods were found for 21 out of 22 tasks over popular benchmark datasets. In particular, cw-VR achieved the best performance for 13 tasks including ResNet-32/110.
Understanding morphological types of galaxies is a key parameter for studying their formation and evolution. Neural networks that have been used previously for galaxy morphology classification have some disadvantages, such as not being invariant under rotation. In this work, we studied the performance of Capsule Network, a recently introduced neural network architecture that is rotationally invariant and spatially aware, on the task of galaxy morphology classification. We designed two evaluation scenarios based on the answers from the question tree in the Galaxy Zoo project. In the first scenario, we used Capsule Network for regression and predicted probabilities for all of the questions. In the second scenario, we chose the answer to the first morphology question that had the highest user agreement as the class of the object and trained a Capsule Network classifier, where we also reconstructed galaxy images. We achieved promising results in both of these scenarios. Automated approaches such as the one introduced here will greatly decrease the workload of astronomers and will play a critical role in the upcoming large sky surveys.
In this paper, we propose FCHD-Fully Convolutional Head Detector, an end-to-end trainable head detection model. Our proposed architecture is a single fully convolutional network which is responsible for both bounding box prediction and classification. This makes our model lightweight with low inference time and memory requirements. Along with run-time, our model has better overall average precision (AP) which is achieved by selection of anchor sizes based on the effective receptive field of the network. This can be concluded from our experiments on several head detection datasets with varying head counts. We achieve an AP of 0.70 on a challenging head detection dataset which is comparable to some standard benchmarks. Along with this our model runs at 5 FPS on Nvidia Quadro M1000M for VGA resolution images. Code is available at https://github.com/aditya-vora/FCHD-Fully-Convolutional-Head-Detector.
In Intelligent Tutoring System (ITS), tracing the student's knowledge state during learning has been studied for several decades in order to provide more supportive learning instructions. In this paper, we propose a novel model for knowledge tracing that i) captures students' learning ability and dynamically assigns students into distinct groups with similar ability at regular time intervals, and ii) combines this information with a Recurrent Neural Network architecture known as Deep Knowledge Tracing. Experimental results confirm that the proposed model is significantly better at predicting student performance than well known state-of-the-art techniques for student modelling.
We present an analysis into the inner workings of Convolutional Neural Networks (CNNs) for processing text. CNNs used for computer vision can be interpreted by projecting filters into image space, but for discrete sequence inputs CNNs remain a mystery. We aim to understand the method by which the networks process and classify text. We examine common hypotheses to this problem: that filters, accompanied by global max-pooling, serve as ngram detectors. We show that filters may capture several different semantic classes of ngrams by using different activation patterns, and that global max-pooling induces behavior which separates important ngrams from the rest. Finally, we show practical use cases derived from our findings in the form of model interpretability (explaining a trained model by deriving a concrete identity for each filter, bridging the gap between visualization tools in vision tasks and NLP) and prediction interpretability (explaining predictions). Code implementation is available online at github.com/sayaendo/interpreting-cnn-for-text.
In many classification problems it is desirable to output well-calibrated probabilities on the different classes. We propose a robust, non-parametric method of calibrating probabilities called SplineCalib that utilizes smoothing splines to determine a calibration function. We demonstrate how applying certain transformations as part of the calibration process can improve performance on problems in deep learning and other domains where the scores tend to be "overconfident". We adapt the approach to multi-class problems and find that better calibration can improve accuracy as well as log-loss by better resolving uncertain cases. Finally, we present a cross-validated approach to calibration which conserves data. Significant improvements to log-loss and accuracy are shown on several different problems. We also introduce the ml-insights python package which contains an implementation of the SplineCalib algorithm.
Thoracic diseases are very serious health problems that plague a large number of people. Chest X-ray is currently one of the most popular methods to diagnose thoracic diseases, playing an important role in the healthcare workflow. However, reading the chest X-ray images and giving an accurate diagnosis remain challenging tasks for expert radiologists. With the success of deep learning in computer vision, a growing number of deep neural network architectures were applied to chest X-ray image classification. However, most of the previous deep neural network classifiers were based on deterministic architectures which are usually very noise-sensitive and are likely to aggravate the overfitting issue. In this paper, to make a deep architecture more robust to noise and to reduce overfitting, we propose using deep generative classifiers to automatically diagnose thorax diseases from the chest X-ray images. Unlike the traditional deterministic classifier, a deep generative classifier has a distribution middle layer in the deep neural network. A sampling layer then draws a random sample from the distribution layer and input it to the following layer for classification. The classifier is generative because the class label is generated from samples of a related distribution. Through training the model with a certain amount of randomness, the deep generative classifiers are expected to be robust to noise and can reduce overfitting and then achieve good performances. We implemented our deep generative classifiers based on a number of well-known deterministic neural network architectures, and tested our models on the chest X-ray14 dataset. The results demonstrated the superiority of deep generative classifiers compared with the corresponding deep deterministic classifiers.
Machine learning models are increasingly used to automate decisions that affect humans - deciding who should receive a loan, a job interview, or a social service. In such applications, a person should have the ability to change the decision of a model. When a person is denied a loan by a credit score, for example, they should be able to alter its input variables in a way that guarantees approval. Otherwise, they will be denied the loan as long as the model is deployed. More importantly, they will lack the ability to influence a decision that affects their livelihood. In this paper, we frame these issues in terms of recourse, which we define as the ability of a person to change the decision of a model by altering actionable input variables (e.g., income vs. age or marital status). We present integer programming tools to ensure recourse in linear classification problems without interfering in model development. We demonstrate how our tools can inform stakeholders through experiments on credit scoring problems. Our results show that recourse can be significantly affected by standard practices in model development, and motivate the need to evaluate recourse in practice.
The MNIST dataset of the handwritten digits is known as one of the commonly used datasets for machine learning and computer vision research. We aim to study a widely applicable classification problem and apply a simple yet efficient K-nearest neighbor classifier with an enhanced heuristic. We evaluate the performance of the K-nearest neighbor classification algorithm on the MNIST dataset where the $L2$ Euclidean distance metric is compared to a modified distance metric which utilizes the sliding window technique in order to avoid performance degradation due to slight spatial misalignments. The accuracy metric and confusion matrices are used as the performance indicators to compare the performance of the baseline algorithm versus the enhanced sliding window method and results show significant improvement using this proposed method.
In this paper, we empirically evaluate the utility of transfer and multi-task learning on a challenging semantic classification task: semantic interpretation of noun--noun compounds. Through a comprehensive series of experiments and in-depth error analysis, we show that transfer learning via parameter initialization and multi-task learning via parameter sharing can help a neural classification model generalize over a highly skewed distribution of relations. Further, we demonstrate how dual annotation with two distinct sets of relations over the same set of compounds can be exploited to improve the overall accuracy of a neural classifier and its F1 scores on the less frequent, but more difficult relations.
Several social, medical, engineering and biological challenges rely on discovering the functionality of networks from their structure and node metadata, when it is available. For example, in chemoinformatics one might want to detect whether a molecule is toxic based on structure and atomic types, or discover the research field of a scientific collaboration network. Existing techniques rely on counting or measuring structural patterns that are known to show large variations from network to network, such as the number of triangles, or the assortativity of node metadata. We introduce the concept of multi-hop assortativity, that captures the similarity of the nodes situated at the extremities of a randomly selected path of a given length. We show that multi-hop assortativity unifies various existing concepts and offers a versatile family of 'fingerprints' to characterize networks. These fingerprints allow in turn to recover the functionalities of a network, with the help of the machine learning toolbox. Our method is evaluated empirically on established social and chemoinformatic network benchmarks. Results reveal that our assortativity based features are competitive providing highly accurate results often outperforming state of the art methods for the network classification task.
Image registration and in particular deformable registration methods are pillars of medical imaging. Inspired by the recent advances in deep learning, we propose in this paper, a novel convolutional neural network architecture that couples linear and deformable registration within a unified architecture endowed with near real-time performance. Our framework is modular with respect to the global transformation component, as well as with respect to the similarity function while it guarantees smooth displacement fields. We evaluate the performance of our network on the challenging problem of MRI lung registration, and demonstrate superior performance with respect to state of the art elastic registration methods. The proposed deformation (between inspiration & expiration) was considered within a clinically relevant task of interstitial lung disease (ILD) classification and showed promising results.
Text classification is an important and classical problem in natural language processing. There have been a number of studies that applied convolutional neural networks (convolution on regular grid, e.g., sequence) to classification. However, only a limited number of studies have explored the more flexible graph convolutional neural networks (convolution on non-grid, e.g., arbitrary graph) for the task. In this work, we propose to use graph convolutional networks for text classification. We build a single text graph for a corpus based on word co-occurrence and document word relations, then learn a Text Graph Convolutional Network (Text GCN) for the corpus. Our Text GCN is initialized with one-hot representation for word and document, it then jointly learns the embeddings for both words and documents, as supervised by the known class labels for documents. Our experimental results on multiple benchmark datasets demonstrate that a vanilla Text GCN without any external word embeddings or knowledge outperforms state-of-the-art methods for text classification. On the other hand, Text GCN also learns predictive word and document embeddings. In addition, experimental results show that the improvement of Text GCN over state-of-the-art comparison methods become more prominent as we lower the percentage of training data, suggesting the robustness of Text GCN to less training data in text classification.
With the arrival of the big data era, more and more data are becoming readily available in various real-world applications and those data are usually highly heterogeneous. Taking computational medicine as an example, we have both Electronic Health Records (EHR) and medical images for each patient. For complicated diseases such as Parkinson's and Alzheimer's, both EHR and neuroimaging information are very important for disease understanding because they contain complementary aspects of the disease. However, EHR and neuroimage are completely different. So far the existing research has been mainly focusing on one of them. In this paper, we proposed a framework, Memory-Based Graph Convolution Network (MemGCN), to perform integrative analysis with such multi-modal data. Specifically, GCN is used to extract useful information from the patients' neuroimages. The information contained in the patient EHRs before the acquisition of each brain image is captured by a memory network because of its sequential nature. The information contained in each brain image is combined with the information read out from the memory network to infer the disease state at the image acquisition timestamp. To further enhance the analytical power of MemGCN, we also designed a multi-hop strategy that allows multiple reading and updating on the memory can be performed at each iteration. We conduct experiments using the patient data from the Parkinson's Progression Markers Initiative (PPMI) with the task of classification of Parkinson's Disease (PD) cases versus controls. We demonstrate that superior classification performance can be achieved with our proposed framework, comparing with existing approaches involving a single type of data.
Class labels are often imperfectly observed, due to mistakes and to genuine ambiguity among classes. We propose a new semi-supervised deep generative model that explicitly models noisy labels, called the Mislabeled VAE (M-VAE). The M-VAE can perform better than existing deep generative models which do not account for label noise. Additionally, the derivation of M-VAE gives new theoretical insights into the popular M1+M2 semi-supervised model.
Time series classification has received great attention over the past decade with a wide range of methods focusing on predictive performance by exploiting various types of temporal features. Nonetheless, little emphasis has been placed on interpretability and explainability. In this paper, we formulate the novel problem of explainable time series tweaking, where, given a time series and an opaque classifier that provides a particular classification decision for the time series, we want to find the minimum number of changes to be performed to the given time series so that the classifier changes its decision to another class. We show that the problem is NP-hard, and focus on two instantiations of the problem, which we refer to as reversible and irreversible time series tweaking. The classifier under investigation is the random shapelet forest classifier. Moreover, we propose two algorithmic solutions for the two problems along with simple optimizations, as well as a baseline solution using the nearest neighbor classifier. An extensive experimental evaluation on a variety of real datasets demonstrates the usefulness and effectiveness of our problem formulation and solutions.
In this paper we address a classification problem where two sources of labels with different levels of fidelity are available. Our approach is to combine data from both sources by applying a co-kriging schema on latent functions, which allows the model to account item-dependent labeling discrepancy. We provide an extension of Laplace inference for Gaussian process classification, that takes into account multi-fidelity data. We evaluate the proposed method on real and synthetic datasets and show that it is more resistant to different levels of discrepancy between sources than other approaches for data fusion. Our method can provide accuracy/cost trade-off for a number of practical tasks such as crowd-sourced data annotation and feasibility regions construction in engineering design.
Label information plays an important role in supervised hyperspectral image classification problem. However, current classification methods all ignore an important and inevitable problem---labels may be corrupted and collecting clean labels for training samples is difficult, and often impractical. Therefore, how to learn from the database with noisy labels is a problem of great practical importance. In this paper, we study the influence of label noise on hyperspectral image classification, and develop a random label propagation algorithm (RLPA) to cleanse the label noise. The key idea of RLPA is to exploit knowledge (e.g., the superpixel based spectral-spatial constraints) from the observed hyperspectral images and apply it to the process of label propagation. Specifically, RLPA first constructs a spectral-spatial probability transfer matrix (SSPTM) that simultaneously considers the spectral similarity and superpixel based spatial information. It then randomly chooses some training samples as "clean" samples and sets the rest as unlabeled samples, and propagates the label information from the "clean" samples to the rest unlabeled samples with the SSPTM. By repeating the random assignment (of "clean" labeled samples and unlabeled samples) and propagation, we can obtain multiple labels for each training sample. Therefore, the final propagated label can be calculated by a majority vote algorithm. Experimental studies show that RLPA can reduce the level of noisy label and demonstrates the advantages of our proposed method over four major classifiers with a significant margin---the gains in terms of the average OA, AA, Kappa are impressive, e.g., 9.18%, 9.58%, and 0.1043. The Matlab source code is available at https://github.com/junjun-jiang/RLPA
Time Series Classification (TSC) is an important and challenging problem in data mining. With the increase of time series data availability, hundreds of TSC algorithms have been proposed. Among these methods, only a few have considered Deep Neural Networks (DNNs) to perform this task. This is surprising as deep learning has seen very successful applications in the last years. DNNs have indeed revolutionized the field of computer vision especially with the advent of novel deeper architectures such as Residual and Convolutional Neural Networks. Apart from images, sequential data such as text and audio can also be processed with DNNs to reach state-of-the-art performance for document classification and speech recognition. In this article, we study the current state-of-the-art performance of deep learning algorithms for TSC by presenting an empirical study of the most recent DNN architectures for TSC. We give an overview of the most successful deep learning applications in various time series domains under a unified taxonomy of DNNs for TSC. We also provide an open source deep learning framework to the TSC community where we implemented each of the compared approaches and evaluated them on a univariate TSC benchmark (the UCR/UEA archive) and 12 multivariate time series datasets. By training 8,730 deep learning models on 97 time series datasets, we propose the most exhaustive study of DNNs for TSC to date.