Knowledge Graphs (KGs) serving as semantic networks, prove highly effective in managing complex interconnected data in different domains, by offering a unified, contextualized, and structured representation with flexibility that allows for easy adaptation to evolving knowledge. Processing complex Human Resources (HR) data, KGs can help in different HR functions like recruitment, job matching, identifying learning gaps, and enhancing employee retention. Despite their potential, limited efforts have been made to implement practical HR knowledge graphs. This study addresses this gap by presenting a framework for effectively developing HR knowledge graphs from documents using Large Language Models. The resulting KG can be used for a variety of downstream tasks, including job matching, identifying employee skill gaps, and many more. In this work, we showcase instances where HR KGs prove instrumental in precise job matching, yielding advantages for both employers and employees. Empirical evidence from experiments with information propagation in KGs and Graph Neural Nets, along with case studies underscores the effectiveness of KGs in tasks such as job and employee recommendations and job area classification. Code and data are available at : https://github.com/azminewasi/HRGraph
Recent advancements in artificial intelligence have significantly improved the automatic generation of radiology reports. However, existing evaluation methods fail to reveal the models' understanding of radiological images and their capacity to achieve human-level granularity in descriptions. To bridge this gap, we introduce a system, named ReXKG, which extracts structured information from processed reports to construct a comprehensive radiology knowledge graph. We then propose three metrics to evaluate the similarity of nodes (ReXKG-NSC), distribution of edges (ReXKG-AMS), and coverage of subgraphs (ReXKG-SCS) across various knowledge graphs. We conduct an in-depth comparative analysis of AI-generated and human-written radiology reports, assessing the performance of both specialist and generalist models. Our study provides a deeper understanding of the capabilities and limitations of current AI models in radiology report generation, offering valuable insights for improving model performance and clinical applicability.
Graph neural networks (GNNs) are frequently used to predict missing facts in knowledge graphs (KGs). Motivated by the lack of explainability for the outputs of these models, recent work has aimed to explain their predictions using Datalog, a widely used logic-based formalism. However, such work has been restricted to certain subclasses of GNNs. In this paper, we consider one of the most popular GNN architectures for KGs, R-GCN, and we provide two methods to extract rules that explain its predictions and are sound, in the sense that each fact derived by the rules is also predicted by the GNN, for any input dataset. Furthermore, we provide a method that can verify that certain classes of Datalog rules are not sound for the R-GCN. In our experiments, we train R-GCNs on KG completion benchmarks, and we are able to verify that no Datalog rule is sound for these models, even though the models often obtain high to near-perfect accuracy. This raises some concerns about the ability of R-GCN models to generalise and about the explainability of their predictions. We further provide two variations to the training paradigm of R-GCN that encourage it to learn sound rules and find a trade-off between model accuracy and the number of learned sound rules.
Multi-hop query answering over a Knowledge Graph (KG) involves traversing one or more hops from the start node to answer a query. Path-based and logic-based methods are state-of-the-art for multi-hop question answering. The former is used in link prediction tasks. The latter is for answering complex logical queries. The logical multi-hop querying technique embeds the KG and queries in the same embedding space. The existing work incorporates First Order Logic (FOL) operators, such as conjunction ($\wedge$), disjunction ($\vee$), and negation ($\neg$), in queries. Though current models have most of the building blocks to execute the FOL queries, they cannot use the dense information of multi-modal entities in the case of Multi-Modal Knowledge Graphs (MMKGs). We propose RConE, an embedding method to capture the multi-modal information needed to answer a query. The model first shortlists candidate (multi-modal) entities containing the answer. It then finds the solution (sub-entities) within those entities. Several existing works tackle path-based question-answering in MMKGs. However, to our knowledge, we are the first to introduce logical constructs in querying MMKGs and to answer queries that involve sub-entities of multi-modal entities as the answer. Extensive evaluation of four publicly available MMKGs indicates that RConE outperforms the current state-of-the-art.
Despite recent success in natural language processing (NLP), fact verification still remains a difficult task. Due to misinformation spreading increasingly fast, attention has been directed towards automatically verifying the correctness of claims. In the domain of NLP, this is usually done by training supervised machine learning models to verify claims by utilizing evidence from trustworthy corpora. We present efficient methods for verifying claims on a dataset where the evidence is in the form of structured knowledge graphs. We use the FactKG dataset, which is constructed from the DBpedia knowledge graph extracted from Wikipedia. By simplifying the evidence retrieval process, from fine-tuned language models to simple logical retrievals, we are able to construct models that both require less computational resources and achieve better test-set accuracy.
Inductive relation prediction (IRP) -- where entities can be different during training and inference -- has shown great power for completing evolving knowledge graphs. Existing works mainly focus on using graph neural networks (GNNs) to learn the representation of the subgraph induced from the target link, which can be seen as an implicit rule-mining process to measure the plausibility of the target link. However, these methods cannot differentiate the target link and other links during message passing, hence the final subgraph representation will contain irrelevant rule information to the target link, which reduces the reasoning performance and severely hinders the applications for real-world scenarios. To tackle this problem, we propose a novel \textit{single-source edge-wise} GNN model to learn the \textbf{R}ule-induc\textbf{E}d \textbf{S}ubgraph represen\textbf{T}ations (\textbf{REST}), which encodes relevant rules and eliminates irrelevant rules within the subgraph. Specifically, we propose a \textit{single-source} initialization approach to initialize edge features only for the target link, which guarantees the relevance of mined rules and target link. Then we propose several RNN-based functions for \textit{edge-wise} message passing to model the sequential property of mined rules. REST is a simple and effective approach with theoretical support to learn the \textit{rule-induced subgraph representation}. Moreover, REST does not need node labeling, which significantly accelerates the subgraph preprocessing time by up to \textbf{11.66$\times$}. Experiments on inductive relation prediction benchmarks demonstrate the effectiveness of our REST. Our code is available at https://github.com/smart-lty/REST.
Temporal knowledge graph completion aims to infer the missing facts in temporal knowledge graphs. Current approaches usually embed factual knowledge into continuous vector space and apply geometric operations to learn potential patterns in temporal knowledge graphs. However, these methods only adopt a single operation, which may have limitations in capturing the complex temporal dynamics present in temporal knowledge graphs. Therefore, we propose a simple but effective method, i.e. TCompoundE, which is specially designed with two geometric operations, including time-specific and relation-specific operations. We provide mathematical proofs to demonstrate the ability of TCompoundE to encode various relation patterns. Experimental results show that our proposed model significantly outperforms existing temporal knowledge graph embedding models. Our code is available at https://github.com/nk-ruiying/TCompoundE.
Knowledge graphs (KGs) enhance the performance of large language models (LLMs) and search engines by providing structured, interconnected data that improves reasoning and context-awareness. However, KGs only focus on text data, thereby neglecting other modalities such as speech. In this work, we introduce wav2graph, the first framework for supervised learning knowledge graph from speech data. Our pipeline are straightforward: (1) constructing a KG based on transcribed spoken utterances and a named entity database, (2) converting KG into embedding vectors, and (3) training graph neural networks (GNNs) for node classification and link prediction tasks. Through extensive experiments conducted in inductive and transductive learning contexts using state-of-the-art GNN models, we provide baseline results and error analysis for node classification and link prediction tasks on human transcripts and automatic speech recognition (ASR) transcripts, including evaluations using both encoder-based and decoder-based node embeddings, as well as monolingual and multilingual acoustic pre-trained models. All related code, data, and models are published online.
Recent advancements in Large Language Models (LLMs) have showcased their proficiency in answering natural language queries. However, their effectiveness is hindered by limited domain-specific knowledge, raising concerns about the reliability of their responses. We introduce a hybrid system that augments LLMs with domain-specific knowledge graphs (KGs), thereby aiming to enhance factual correctness using a KG-based retrieval approach. We focus on a medical KG to demonstrate our methodology, which includes (1) pre-processing, (2) Cypher query generation, (3) Cypher query processing, (4) KG retrieval, and (5) LLM-enhanced response generation. We evaluate our system on a curated dataset of 69 samples, achieving a precision of 78\% in retrieving correct KG nodes. Our findings indicate that the hybrid system surpasses a standalone LLM in accuracy and completeness, as verified by an LLM-as-a-Judge evaluation method. This positions the system as a promising tool for applications that demand factual correctness and completeness, such as target identification -- a critical process in pinpointing biological entities for disease treatment or crop enhancement. Moreover, its intuitive search interface and ability to provide accurate responses within seconds make it well-suited for time-sensitive, precision-focused research contexts. We publish the source code together with the dataset and the prompt templates used.
Advancements in AI and natural language processing have revolutionized machine-human language interactions, with question answering (QA) systems playing a pivotal role. The knowledge base question answering (KBQA) task, utilizing structured knowledge graphs (KG), allows for handling extensive knowledge-intensive questions. However, a significant gap exists in KBQA datasets, especially for low-resource languages. Many existing construction pipelines for these datasets are outdated and inefficient in human labor, and modern assisting tools like Large Language Models (LLM) are not utilized to reduce the workload. To address this, we have designed and implemented a modern, semi-automated approach for creating datasets, encompassing tasks such as KBQA, Machine Reading Comprehension (MRC), and Information Retrieval (IR), tailored explicitly for low-resource environments. We executed this pipeline and introduced the PUGG dataset, the first Polish KBQA dataset, and novel datasets for MRC and IR. Additionally, we provide a comprehensive implementation, insightful findings, detailed statistics, and evaluation of baseline models.
Recent years, multi-hop reasoning has been widely studied for knowledge graph (KG) reasoning due to its efficacy and interpretability. However, previous multi-hop reasoning approaches are subject to two primary shortcomings. First, agents struggle to learn effective and robust policies at the early phase due to sparse rewards. Second, these approaches often falter on specific datasets like sparse knowledge graphs, where agents are required to traverse lengthy reasoning paths. To address these problems, we propose a multi-hop reasoning model with dual agents based on hierarchical reinforcement learning (HRL), which is named FULORA. FULORA tackles the above reasoning challenges by eFficient GUidance-ExpLORAtion between dual agents. The high-level agent walks on the simplified knowledge graph to provide stage-wise hints for the low-level agent walking on the original knowledge graph. In this framework, the low-level agent optimizes a value function that balances two objectives: (1) maximizing return, and (2) integrating efficient guidance from the high-level agent. Experiments conducted on three real-word knowledge graph datasets demonstrate that FULORA outperforms RL-based baselines, especially in the case of long-distance reasoning.
Aerospace manufacturing companies, such as Thales Alenia Space, design, develop, integrate, verify, and validate products characterized by high complexity and low volume. They carefully document all phases for each product but analyses across products are challenging due to the heterogeneity and unstructured nature of the data in documents. In this paper, we propose a hybrid methodology that leverages Knowledge Graphs (KGs) in conjunction with Large Language Models (LLMs) to extract and validate data contained in these documents. We consider a case study focused on test data related to electronic boards for satellites. To do so, we extend the Semantic Sensor Network ontology. We store the metadata of the reports in a KG, while the actual test results are stored in parquet accessible via a Virtual Knowledge Graph. The validation process is managed using an LLM-based approach. We also conduct a benchmarking study to evaluate the performance of state-of-the-art LLMs in executing this task. Finally, we analyze the costs and benefits of automating preexisting processes of manual data extraction and validation for subsequent cross-report analyses.
Knowledge models are fundamental to dialogue systems for enabling conversational interactions, which require handling domain-specific knowledge. Ensuring effective communication in information-providing conversations entails aligning user understanding with the knowledge available to the system. However, dialogue systems often face challenges arising from semantic inconsistencies in how information is expressed in natural language compared to how it is represented within the system's internal knowledge. To address this problem, we study the potential of large language models for conversational grounding, a mechanism to bridge information gaps by establishing shared knowledge between dialogue participants. Our approach involves annotating human conversations across five knowledge domains to create a new dialogue corpus called BridgeKG. Through a series of experiments on this dataset, we empirically evaluate the capabilities of large language models in classifying grounding acts and identifying grounded information items within a knowledge graph structure. Our findings offer insights into how these models use in-context learning for conversational grounding tasks and common prediction errors, which we illustrate with examples from challenging dialogues. We discuss how the models handle knowledge graphs as a semantic layer between unstructured dialogue utterances and structured information items.
Temporal knowledge graphs (TKGs) are valuable resources for capturing evolving relationships among entities, yet they are often plagued by noise, necessitating robust anomaly detection mechanisms. Existing dynamic graph anomaly detection approaches struggle to capture the rich semantics introduced by node and edge categories within TKGs, while TKG embedding methods lack interpretability, undermining the credibility of anomaly detection. Moreover, these methods falter in adapting to pattern changes and semantic drifts resulting from knowledge updates. To tackle these challenges, we introduce AnoT, an efficient TKG summarization method tailored for interpretable online anomaly detection in TKGs. AnoT begins by summarizing a TKG into a novel rule graph, enabling flexible inference of complex patterns in TKGs. When new knowledge emerges, AnoT maps it onto a node in the rule graph and traverses the rule graph recursively to derive the anomaly score of the knowledge. The traversal yields reachable nodes that furnish interpretable evidence for the validity or the anomalous of the new knowledge. Overall, AnoT embodies a detector-updater-monitor architecture, encompassing a detector for offline TKG summarization and online scoring, an updater for real-time rule graph updates based on emerging knowledge, and a monitor for estimating the approximation error of the rule graph. Experimental results on four real-world datasets demonstrate that AnoT surpasses existing methods significantly in terms of accuracy and interoperability. All of the raw datasets and the implementation of AnoT are provided in https://github.com/zjs123/ANoT.
Proteins play a vital role in biological processes and are indispensable for living organisms. Accurate representation of proteins is crucial, especially in drug development. Recently, there has been a notable increase in interest in utilizing machine learning and deep learning techniques for unsupervised learning of protein representations. However, these approaches often focus solely on the amino acid sequence of proteins and lack factual knowledge about proteins and their interactions, thus limiting their performance. In this study, we present GOProteinGNN, a novel architecture that enhances protein language models by integrating protein knowledge graph information during the creation of amino acid level representations. Our approach allows for the integration of information at both the individual amino acid level and the entire protein level, enabling a comprehensive and effective learning process through graph-based learning. By doing so, we can capture complex relationships and dependencies between proteins and their functional annotations, resulting in more robust and contextually enriched protein representations. Unlike previous methods, GOProteinGNN uniquely learns the entire protein knowledge graph during training, which allows it to capture broader relational nuances and dependencies beyond mere triplets as done in previous work. We perform a comprehensive evaluation on several downstream tasks demonstrating that GOProteinGNN consistently outperforms previous methods, showcasing its effectiveness and establishing it as a state-of-the-art solution for protein representation learning.
Knowledge graphs (KGs) complement Large Language Models (LLMs) by providing reliable, structured, domain-specific, and up-to-date external knowledge. However, KGs and LLMs are often developed separately and must be integrated after training. We introduce Tree-of-Traversals, a novel zero-shot reasoning algorithm that enables augmentation of black-box LLMs with one or more KGs. The algorithm equips a LLM with actions for interfacing a KG and enables the LLM to perform tree search over possible thoughts and actions to find high confidence reasoning paths. We evaluate on two popular benchmark datasets. Our results show that Tree-of-Traversals significantly improves performance on question answering and KG question answering tasks. Code is available at \url{https://github.com/amazon-science/tree-of-traversals}
The integration of knowledge graphs and graph machine learning (GML) in genomic data analysis offers several opportunities for understanding complex genetic relationships, especially at the RNA level. We present a comprehensive approach for leveraging these technologies to analyze genomic variants, specifically in the context of RNA sequencing (RNA-seq) data from COVID-19 patient samples. The proposed method involves extracting variant-level genetic information, annotating the data with additional metadata using SnpEff, and converting the enriched Variant Call Format (VCF) files into Resource Description Framework (RDF) triples. The resulting knowledge graph is further enhanced with patient metadata and stored in a graph database, facilitating efficient querying and indexing. We utilize the Deep Graph Library (DGL) to perform graph machine learning tasks, including node classification with GraphSAGE and Graph Convolutional Networks (GCNs). Our approach demonstrates significant utility using our proposed tool, VariantKG, in three key scenarios: enriching graphs with new VCF data, creating subgraphs based on user-defined features, and conducting graph machine learning for node classification.
Multi-modal entity alignment (MMEA) aims to identify equivalent entities between multi-modal knowledge graphs (MMKGs), where the entities can be associated with related images. Most existing studies integrate multi-modal information heavily relying on the automatically-learned fusion module, rarely suppressing the redundant information for MMEA explicitly. To this end, we explore variational information bottleneck for multi-modal entity alignment (IBMEA), which emphasizes the alignment-relevant information and suppresses the alignment-irrelevant information in generating entity representations. Specifically, we devise multi-modal variational encoders to generate modal-specific entity representations as probability distributions. Then, we propose four modal-specific information bottleneck regularizers, limiting the misleading clues in refining modal-specific entity representations. Finally, we propose a modal-hybrid information contrastive regularizer to integrate all the refined modal-specific representations, enhancing the entity similarity between MMKGs to achieve MMEA. We conduct extensive experiments on two cross-KG and three bilingual MMEA datasets. Experimental results demonstrate that our model consistently outperforms previous state-of-the-art methods, and also shows promising and robust performance in low-resource and high-noise data scenarios.
Multi-modal entity alignment (MMEA) aims to identify equivalent entities between two multi-modal knowledge graphs (MMKGs), whose entities can be associated with relational triples and related images. Most previous studies treat the graph structure as a special modality, and fuse different modality information with separate uni-modal encoders, neglecting valuable relational associations in modalities. Other studies refine each uni-modal information with graph structures, but may introduce unnecessary relations in specific modalities. To this end, we propose a novel local-to-global interaction network for MMEA, termed as LoginMEA. Particularly, we first fuse local multi-modal interactions to generate holistic entity semantics and then refine them with global relational interactions of entity neighbors. In this design, the uni-modal information is fused adaptively, and can be refined with relations accordingly. To enrich local interactions of multi-modal entity information, we device modality weights and low-rank interactive fusion, allowing diverse impacts and element-level interactions among modalities. To capture global interactions of graph structures, we adopt relation reflection graph attention networks, which fully capture relational associations between entities. Extensive experiments demonstrate superior results of our method over 5 cross-KG or bilingual benchmark datasets, indicating the effectiveness of capturing local and global interactions.
Knowledge graphs (KGs) are essential in applications such as network alignment, question-answering, and recommender systems (RSs) since they offer structured relational data that facilitate the inference of indirect relationships. However, the development of KG-based RSs capable of processing user inputs in natural language faces significant challenges. Firstly, natural language processing units must effectively handle the ambiguity and variability in human language to interpret user intents accurately. Secondly, the system must precisely identify and link entities, like product names, to their corresponding nodes in KGs. To overcome these challenges, supported by Lenovo, we developed a novel chatbot called "Prometheus," which integrates a KG with a large language model (LLM), specifically designed for recommending computer components. This chatbot can accurately decode user requests and deliver personalized recommendations derived from KGs, ensuring precise comprehension and response to their computer setup needs.