We present a transductive deep learning-based formulation for the sparse representation-based classification (SRC) method. The proposed network consists of a convolutional autoencoder along with a fully-connected layer. The role of the autoencoder network is to learn robust deep features for classification. On the other hand, the fully-connected layer, which is placed in between the encoder and the decoder networks, is responsible for finding the sparse representation. The estimated sparse codes are then used for classification. Various experiments on three different datasets show that the proposed network leads to sparse representations that give better classification results than state-of-the-art SRC methods. The source code is available at: github.com/mahdiabavisani/DSRC.
A challenging problem in deep learning-based machine listening field is the degradation of the performance when using data from unseen conditions. In this paper we focus on the acoustic scene classification (ASC) task and propose an adversarial deep learning method to allow adapting an acoustic scene classification system to deal with a new acoustic channel resulting from data captured with a different recording device. We build upon the theoretical model of H{\Delta}H-distance and previous adversarial discriminative deep learning method for ASC unsupervised domain adaptation, and we present an adversarial training based method using the Wasserstein distance. We improve the state-of-the-art mean accuracy on the data from the unseen conditions from 32% to 45%, using the TUT Acoustic Scenes dataset.
In recent years, deep learning techniques revolutionized the way remote sensing data are processed. Classification of hyperspectral data is no exception to the rule, but has intrinsic specificities which make application of deep learning less straightforward than with other optical data. This article presents a state of the art of previous machine learning approaches, reviews the various deep learning approaches currently proposed for hyperspectral classification, and identifies the problems and difficulties which arise to implement deep neural networks for this task. In particular, the issues of spatial and spectral resolution, data volume, and transfer of models from multimedia images to hyperspectral data are addressed. Additionally, a comparative study of various families of network architectures is provided and a software toolbox is publicly released to allow experimenting with these methods. 1 This article is intended for both data scientists with interest in hyperspectral data and remote sensing experts eager to apply deep learning techniques to their own dataset.
Uterine cancer, also known as endometrial cancer, can seriously affect the female reproductive organs, and histopathological image analysis is the gold standard for diagnosing endometrial cancer. However, due to the limited capability of modeling the complicated relationships between histopathological images and their interpretations, these computer-aided diagnosis (CADx) approaches based on traditional machine learning algorithms often failed to achieve satisfying results. In this study, we developed a CADx approach using a convolutional neural network (CNN) and attention mechanisms, called HIENet. Because HIENet used the attention mechanisms and feature map visualization techniques, it can provide pathologists better interpretability of diagnoses by highlighting the histopathological correlations of local (pixel-level) image features to morphological characteristics of endometrial tissue. In the ten-fold cross-validation process, the CADx approach, HIENet, achieved a 76.91 $\pm$ 1.17% (mean $\pm$ s. d.) classification accuracy for four classes of endometrial tissue, namely normal endometrium, endometrial polyp, endometrial hyperplasia, and endometrial adenocarcinoma. Also, HIENet achieved an area-under-the-curve (AUC) of 0.9579 $\pm$ 0.0103 with an 81.04 $\pm$ 3.87% sensitivity and 94.78 $\pm$ 0.87% specificity in a binary classification task that detected endometrioid adenocarcinoma (Malignant). Besides, in the external validation process, HIENet achieved an 84.50% accuracy in the four-class classification task, and it achieved an AUC of 0.9829 with a 77.97% (95% CI, 65.27%-87.71%) sensitivity and 100% (95% CI, 97.42%-100.00%) specificity. In summary, the proposed CADx approach, HIENet, outperformed three human experts and four end-to-end CNN-based classifiers on this small-scale dataset composed of 3,500 hematoxylin and eosin (H&E) images regarding overall classification performance.
The connectionist temporal classification (CTC) enables end-to-end sequence learning by maximizing the probability of correctly recognizing sequences during training. The outputs of a CTC-trained model tend to form a series of spikes separated by strongly predicted blanks, know as the spiky problem. To figure out the reason for it, we reinterpret the CTC training process as an iterative fitting task that is based on frame-wise cross-entropy loss. It offers us an intuitive way to compare target probabilities with model outputs for each iteration, and explain how the model outputs gradually turns spiky. Inspired by it, we put forward two ways to modify the CTC training. The experiments demonstrate that our method can well solve the spiky problem and moreover, lead to faster convergence over various training settings. Beside this, the reinterpretation of CTC, as a brand new perspective, may be potentially useful in other situations. The code is publicly available at https://github.com/hzli-ucas/caffe/tree/ctc.
The Oxford Nanopore Technologies's MinION is the first portable DNA sequencing device. It is capable of producing long reads, over 100 kBp were reported. However, it has significantly higher error rate than other methods. In this study, we present MinCall, an end2end basecaller model for the MinION. The model is based on deep learning and uses convolutional neural networks (CNN) in its implementation. For extra performance, it uses cutting edge deep learning techniques and architectures, batch normalization and Connectionist Temporal Classification (CTC) loss. The best performing deep learning model achieves 91.4% median match rate on E. Coli dataset using R9 pore chemistry and 1D reads.
The proper classification of major eye movements, saccades, fixations, and smooth pursuits, remains essential to utilizing eye-tracking data. There is difficulty in separating out smooth pursuits from the other behavior types, particularly from fixations. To this end, we propose a new offline algorithm, I-VDT-HMM, for tertiary classification of eye movements. The algorithm combines the simplicity of two foundational algorithms, I-VT and I-DT, as has been implemented in I-VDT, with the statistical predictive power of the Viterbi algorithm. We evaluate the fitness across a dataset of eight eye movement records at eight sampling rates gathered from previous research, with a comparison to the current state-of-the-art using the proposed quantitative and qualitative behavioral scores. The proposed algorithm achieves promising results in clean high sampling frequency data and with slight modifications could show similar results with lower quality data. Though, the statistical aspect of the algorithm comes at a cost of classification time.
Graph Neural Networks (GNNs) have been popularly used for analyzing non-Euclidean data such as social network data and biological data. Despite their success, the design of graph neural networks requires a lot of manual work and domain knowledge. In this paper, we propose a Graph Neural Architecture Search method (GraphNAS for short) that enables automatic search of the best graph neural architecture based on reinforcement learning. Specifically, GraphNAS first uses a recurrent network to generate variable-length strings that describe the architectures of graph neural networks, and then trains the recurrent network with reinforcement learning to maximize the expected accuracy of the generated architectures on a validation data set. Extensive experimental results on node classification tasks in both transductive and inductive learning settings demonstrate that GraphNAS can achieve consistently better performance on the Cora, Citeseer, Pubmed citation network, and protein-protein interaction network. On node classification tasks, GraphNAS can design a novel network architecture that rivals the best human-invented architecture in terms of test set accuracy.
In this paper, we present two image classification models on the Tiny ImageNet dataset. We built two very different networks from scratch based on the idea of Densely Connected Convolution Networks. The architecture of the networks is designed based on the image resolution of this specific dataset and by calculating the Receptive Field of the convolution layers. We also used some non-conventional techniques related to image augmentation and Cyclical Learning Rate to improve the accuracy of our models. The networks are trained under high constraints and low computation resources. We aimed to achieve top-1 validation accuracy of 60%; the results and error analysis are also presented.
Prior work has commonly defined argument retrieval from heterogeneous document collections as a sentence-level classification task. Consequently, argument retrieval suffers both from low recall and from sentence segmentation errors making it difficult for humans and machines to consume the arguments. In this work, we argue that the task should be performed on a more fine-grained level of sequence labeling. For this, we define the task as Argument Unit Recognition and Classification (AURC). We present a dataset of arguments from heterogeneous sources annotated as spans of tokens within a sentence, as well as with a corresponding stance. We show that and how such difficult argument annotations can be effectively collected through crowdsourcing with high interannotator agreement. The new benchmark, AURC-8, contains up to 15% more arguments per topic as compared to annotations on the sentence level. We identify a number of methods targeted at AURC sequence labeling, achieving close to human performance on known domains. Further analysis also reveals that, contrary to previous approaches, our methods are more robust against sentence segmentation errors. We publicly release our code and the AURC-8 dataset.
In this paper, we present an end-to-end approach for environmental sound classification based on a 1D Convolution Neural Network (CNN) that learns a representation directly from the audio signal. Several convolutional layers are used to capture the signal's fine time structure and learn diverse filters that are relevant to the classification task. The proposed approach can deal with audio signals of any length as it splits the signal into overlapped frames using a sliding window. Different architectures considering several input sizes are evaluated, including the initialization of the first convolutional layer with a Gammatone filterbank that models the human auditory filter response in the cochlea. The performance of the proposed end-to-end approach in classifying environmental sounds was assessed on the UrbanSound8k dataset and the experimental results have shown that it achieves 89% of mean accuracy. Therefore, the propose approach outperforms most of the state-of-the-art approaches that use handcrafted features or 2D representations as input. Furthermore, the proposed approach has a small number of parameters compared to other architectures found in the literature, which reduces the amount of data required for training.
The emergence of deep learning networks raises a need for explainable AI so that users and domain experts can be confident applying them to high-risk decisions. In this paper, we leverage data from the latent space induced by deep learning models to learn stereotypical representations or "prototypes" during training to elucidate the algorithmic decision-making process. We study how leveraging prototypes effect classification decisions of two dimensional time-series data in a few different settings: (1) electrocardiogram (ECG) waveforms to detect clinical bradycardia, a slowing of heart rate, in preterm infants, (2) respiration waveforms to detect apnea of prematurity, and (3) audio waveforms to classify spoken digits. We improve upon existing models by optimizing for increased prototype diversity and robustness, visualize how these prototypes in the latent space are used by the model to distinguish classes, and show that prototypes are capable of learning features on two dimensional time-series data to produce explainable insights during classification tasks. We show that the prototypes are capable of learning real-world features - bradycardia in ECG, apnea in respiration, and articulation in speech - as well as features within sub-classes. Our novel work leverages learned prototypical framework on two dimensional time-series data to produce explainable insights during classification tasks.
Deep neural decision forest (NDF) achieved remarkable performance on various vision tasks via combining decision tree and deep representation learning. In this work, we first trace the decision-making process of this model and visualize saliency maps to understand which portion of the input influence it more for both classification and regression problems. We then apply NDF on a multi-task coordinate regression problem and demonstrate the distribution of routing probabilities, which is vital for interpreting NDF yet not shown for regression problems. The pre-trained model and code for visualization will be available at https://github.com/Nicholasli1995/VisualizingNDF
In this paper we present our approach and the system description for Sub Task A of SemEval 2019 Task 9: Suggestion Mining from Online Reviews and Forums. Given a sentence, the task asks to predict whether the sentence consists of a suggestion or not. Our model is based on Universal Language Model Fine-tuning for Text Classification. We apply various pre-processing techniques before training the language and the classification model. We further provide detailed analysis of the results obtained using the trained model. Our team ranked 10th out of 34 participants, achieving an F1 score of 0.7011. We publicly share our implementation at https://github.com/isarth/SemEval9_MIDAS
Recognition of defects in concrete infrastructure, especially in bridges, is a costly and time consuming crucial first step in the assessment of the structural integrity. Large variation in appearance of the concrete material, changing illumination and weather conditions, a variety of possible surface markings as well as the possibility for different types of defects to overlap, make it a challenging real-world task. In this work we introduce the novel COncrete DEfect BRidge IMage dataset (CODEBRIM) for multi-target classification of five commonly appearing concrete defects. We investigate and compare two reinforcement learning based meta-learning approaches, MetaQNN and efficient neural architecture search, to find suitable convolutional neural network architectures for this challenging multi-class multi-target task. We show that learned architectures have fewer overall parameters in addition to yielding better multi-target accuracy in comparison to popular neural architectures from the literature evaluated in the context of our application.
Machine learning-based imaging diagnostics has recently reached or even superseded the level of clinical experts in several clinical domains. However, classification decisions of a trained machine learning system are typically non-transparent, a major hindrance for clinical integration, error tracking or knowledge discovery. In this study, we present a transparent deep learning framework relying on convolutional neural networks (CNNs) and layer-wise relevance propagation (LRP) for diagnosing multiple sclerosis (MS). MS is commonly diagnosed utilizing a combination of clinical presentation and conventional magnetic resonance imaging (MRI), specifically the occurrence and presentation of white matter lesions in T2-weighted images. We hypothesized that using LRP in a naive predictive model would enable us to uncover relevant image features that a trained CNN uses for decision-making. Since imaging markers in MS are well-established this would enable us to validate the respective CNN model. First, we pre-trained a CNN on MRI data from the Alzheimer's Disease Neuroimaging Initiative (n = 921), afterwards specializing the CNN to discriminate between MS patients and healthy controls (n = 147). Using LRP, we then produced a heatmap for each subject in the holdout set depicting the voxel-wise relevance for a particular classification decision. The resulting CNN model resulted in a balanced accuracy of 87.04% and an area under the curve of 96.08% in a receiver operating characteristic curve. The subsequent LRP visualization revealed that the CNN model focuses indeed on individual lesions, but also incorporates additional information such as lesion location, non-lesional white matter or gray matter areas such as the thalamus, which are established conventional and advanced MRI markers in MS. We conclude that LRP and the proposed framework have the capability to make diagnostic decisions of...
We address the unsupervised open domain recognition (UODR) problem, where categories in labeled source domain S is only a subset of those in unlabeled target domain T. The task is to correctly classify all samples in T including known and unknown categories. UODR is challenging due to the domain discrepancy, which becomes even harder to bridge when a large number of unknown categories exist in T. Moreover, the classification rules propagated by graph CNN (GCN) may be distracted by unknown categories and lack generalization capability. To measure the domain discrepancy for asymmetric label space between S and T, we propose Semantic-Guided Matching Discrepancy (SGMD), which first employs instance matching between S and T, and then the discrepancy is measured by a weighted feature distance between matched instances. We further design a limited balance constraint to achieve a more balanced classification output on known and unknown categories. We develop Unsupervised Open Domain Transfer Network (UODTN), which learns both the backbone classification network and GCN jointly by reducing the SGMD, enforcing the limited balance constraint and minimizing the classification loss on S. UODTN better preserves the semantic structure and enforces the consistency between the learned domain invariant visual features and the semantic embeddings. Experimental results show superiority of our method on recognizing images of both known and unknown categories.
Deep neural networks (DNN) are known to be vulnerable to adversarial attacks. Numerous efforts either try to patch weaknesses in trained models, or try to make it difficult or costly to compute adversarial examples that exploit them. In our work, we explore a new "honeypot" approach to protect DNN models. We intentionally inject trapdoors, honeypot weaknesses in the classification manifold that attract attackers searching for adversarial examples. Attackers' optimization algorithms gravitate towards trapdoors, leading them to produce attacks similar to trapdoors in the feature space. Our defense then identifies attacks by comparing neuron activation signatures of inputs to those of trapdoors. In this paper, we introduce trapdoors and describe an implementation of a trapdoor-enabled defense. First, we analytically prove that trapdoors shape the computation of adversarial attacks so that attack inputs will have feature representations very similar to those of trapdoors. Second, we experimentally show that trapdoor-protected models can detect, with high accuracy, adversarial examples generated by state-of-the-art attacks (PGD, optimization-based CW, Elastic Net, BPDA), with negligible impact on normal classification. These results generalize across classification domains, including image, facial, and traffic-sign recognition. We also present significant results measuring trapdoors' robustness against customized adaptive attacks (countermeasures).
We present a novel learning-based approach to estimate the direction-of-arrival (DOA) of a sound source using a convolutional recurrent neural network (CRNN) trained via regression on synthetic data and Cartesian labels. We also describe an improved method to generate synthetic data to train the neural network using state-of-the-art sound propagation algorithms that model specular as well as diffuse reflections of sound. We compare our model against three other CRNNs trained using different formulations of the same problem: classification on categorical labels, and regression on spherical coordinate labels. In practice, our model achieves up to 43% decrease in angular error over prior methods. The use of diffuse reflection results in 34% and 41% reduction in angular prediction errors on LOCATA and SOFA datasets, respectively, over prior methods based on image-source methods. Our method results in an additional 3% error reduction over prior schemes that use classification based networks, and we use 36% fewer network parameters.
Extreme multi-label classification (XMC) refers to supervised multi-label learning involving hundreds of thousand or even millions of labels. In this paper, we develop a suite of algorithms, called Bonsai, which generalizes the notion of label representation in XMC, and partitions the labels in the representation space to learn shallow trees. We show three concrete realizations of this label representation space including : (i) the input space which is spanned by the input features, (ii) the output space spanned by label vectors based on their co-occurrence with other labels, and (iii) the joint space by combining the input and output representations. Furthermore, the constraint-free multi-way partitions learnt iteratively in these spaces lead to shallow trees. By combining the effect of shallow trees and generalized label representation, Bonsai achieves the best of both worlds - fast training which is comparable to state-of-the-art tree-based methods in XMC, and much better prediction accuracy, particularly on tail-labels. On a benchmark Amazon-3M dataset with 3 million labels, \bonsai outperforms a state-of-the-art one-vs-rest method in terms of prediction accuracy, while being approximately 200 times faster to train. The code for Bonsai is available at \url{https://github.com/xmc-aalto/bonsai}