Many real-world applications collect data in a streaming environment, where learning tasks are encountered sequentially. This necessitates continual learning (CL) to update models online, enabling adaptation to new tasks while preserving past knowledge to prevent catastrophic forgetting. Nowadays, with the flourish of large pre-trained models (LPMs), efficiency has become increasingly critical for CL, due to their substantial computational demands and growing parameter sizes. In this paper, we introduce TreeLoRA (K-D Tree of Low-Rank Adapters), a novel approach that constructs layer-wise adapters by leveraging hierarchical gradient similarity to enable efficient CL, particularly for LPMs. To reduce the computational burden of task similarity estimation, we employ bandit techniques to develop an algorithm based on lower confidence bounds to efficiently explore the task structure. Furthermore, we use sparse gradient updates to facilitate parameter optimization, making the approach better suited for LPMs. Theoretical analysis is provided to justify the rationale behind our approach, and experiments on both vision transformers (ViTs) and large language models (LLMs) demonstrate the effectiveness and efficiency of our approach across various domains, including vision and natural language processing tasks.
Recently, Graph Neural Networks (GNNs) have become the dominant approach for Knowledge Graph-aware Recommender Systems (KGRSs) due to their proven effectiveness. Building upon GNN-based KGRSs, Self-Supervised Learning (SSL) has been incorporated to address the sparity issue, leading to longer training time. However, through extensive experiments, we reveal that: (1)compared to other KGRSs, the existing GNN-based KGRSs fail to keep their superior performance under sparse interactions even with SSL. (2) More complex models tend to perform worse in sparse interaction scenarios and complex mechanisms, like attention mechanism, can be detrimental as they often increase learning difficulty. Inspired by these findings, we propose LightKG, a simple yet powerful GNN-based KGRS to address sparsity issues. LightKG includes a simplified GNN layer that encodes directed relations as scalar pairs rather than dense embeddings and employs a linear aggregation framework, greatly reducing the complexity of GNNs. Additionally, LightKG incorporates an efficient contrastive layer to implement SSL. It directly minimizes the node similarity in original graph, avoiding the time-consuming subgraph generation and comparison required in previous SSL methods. Experiments on four benchmark datasets show that LightKG outperforms 12 competitive KGRSs in both sparse and dense scenarios while significantly reducing training time. Specifically, it surpasses the best baselines by an average of 5.8\% in recommendation accuracy and saves 84.3\% of training time compared to KGRSs with SSL. Our code is available at https://github.com/1371149/LightKG.
Developing AI agents that can robustly adapt to dramatically different strategic landscapes without retraining is a central challenge for multi-agent learning. Pok\'emon Video Game Championships (VGC) is a domain with an extraordinarily large space of possible team configurations of approximately $10^{139}$ - far larger than those of Dota or Starcraft. The highly discrete, combinatorial nature of team building in Pok\'emon VGC causes optimal strategies to shift dramatically depending on both the team being piloted and the opponent's team, making generalization uniquely challenging. To advance research on this problem, we introduce VGC-Bench: a benchmark that provides critical infrastructure, standardizes evaluation protocols, and supplies human-play datasets and a range of baselines - from large-language-model agents and behavior cloning to reinforcement learning and empirical game-theoretic methods such as self-play, fictitious play, and double oracle. In the restricted setting where an agent is trained and evaluated on a single-team configuration, our methods are able to win against a professional VGC competitor. We extensively evaluated all baseline methods over progressively larger team sets and find that even the best-performing algorithm in the single-team setting struggles at scaling up as team size grows. Thus, policy generalization across diverse team strategies remains an open challenge for the community. Our code is open sourced at https://github.com/cameronangliss/VGC-Bench.
Recent advances in medical imaging have established deep learning-based segmentation as the predominant approach, though it typically requires large amounts of manually annotated data. However, obtaining annotations for intracranial hemorrhage (ICH) remains particularly challenging due to the tedious and costly labeling process. Semi-supervised learning (SSL) has emerged as a promising solution to address the scarcity of labeled data, especially in volumetric medical image segmentation. Unlike conventional SSL methods that primarily focus on high-confidence pseudo-labels or consistency regularization, we propose SWDL-Net, a novel SSL framework that exploits the complementary advantages of Laplacian pyramid and deep convolutional upsampling. The Laplacian pyramid excels at edge sharpening, while deep convolutions enhance detail precision through flexible feature mapping. Our framework achieves superior segmentation of lesion details and boundaries through a difference learning mechanism that effectively integrates these complementary approaches. Extensive experiments on a 271-case ICH dataset and public benchmarks demonstrate that SWDL-Net outperforms current state-of-the-art methods in scenarios with only 2% labeled data. Additional evaluations on the publicly available Brain Hemorrhage Segmentation Dataset (BHSD) with 5% labeled data further confirm the superiority of our approach. Code and data have been released at https://github.com/SIAT-CT-LAB/SWDL.
Genomic language models (gLMs) show potential for generating novel, functional DNA sequences for synthetic biology, but doing so requires them to learn not just evolutionary plausibility, but also sequence-to-function relationships. We introduce a set of prediction tasks called Nullsettes, which assesses a model's ability to predict loss-of-function mutations created by translocating key control elements in synthetic expression cassettes. Across 12 state-of-the-art models, we find that mutation effect prediction performance strongly correlates with the predicted likelihood of the nonmutant. Furthermore, the range of likelihood values predictive of strong model performance is highly dependent on sequence length. Our work highlights the importance of considering both sequence likelihood and sequence length when using gLMs for mutation effect prediction.
Reinforcement learning (RL) has shown great effectiveness for fine-tuning large language models (LLMs) using tasks that are challenging yet easily verifiable, such as math reasoning or code generation. However, extending this success to visual perception in vision-language models (VLMs) has been impeded by the scarcity of vision-centric tasks that are simultaneously challenging and unambiguously verifiable. To this end, we introduce ViCrit (Visual Caption Hallucination Critic), an RL proxy task that trains VLMs to localize a subtle, synthetic visual hallucination injected into paragraphs of human-written image captions. Starting from a 200-word captions, we inject a single, subtle visual description error-altering a few words on objects, attributes, counts, or spatial relations-and task the model to pinpoint the corrupted span given the image and the modified caption. This formulation preserves the full perceptual difficulty while providing a binary, exact-match reward that is easy to compute and unambiguous. Models trained with the ViCrit Task exhibit substantial gains across a variety of VL benchmarks. Crucially, the improvements transfer beyond natural-image training data to abstract image reasoning and visual math, showing promises of learning to perceive rather than barely memorizing seen objects. To facilitate evaluation, we further introduce ViCrit-Bench, a category-balanced diagnostic benchmark that systematically probes perception errors across diverse image domains and error types. Together, our results demonstrate that fine-grained hallucination criticism is an effective and generalizable objective for enhancing visual perception in VLMs.
We show how to use low-quality, synthetic, and out-of-distribution images to improve the quality of a diffusion model. Typically, diffusion models are trained on curated datasets that emerge from highly filtered data pools from the Web and other sources. We show that there is immense value in the lower-quality images that are often discarded. We present Ambient Diffusion Omni, a simple, principled framework to train diffusion models that can extract signal from all available images during training. Our framework exploits two properties of natural images -- spectral power law decay and locality. We first validate our framework by successfully training diffusion models with images synthetically corrupted by Gaussian blur, JPEG compression, and motion blur. We then use our framework to achieve state-of-the-art ImageNet FID, and we show significant improvements in both image quality and diversity for text-to-image generative modeling. The core insight is that noise dampens the initial skew between the desired high-quality distribution and the mixed distribution we actually observe. We provide rigorous theoretical justification for our approach by analyzing the trade-off between learning from biased data versus limited unbiased data across diffusion times.
Self-supervised learning (SSL) has proven to be a powerful approach for extracting biologically meaningful representations from single-cell data. To advance our understanding of SSL methods applied to single-cell data, we present scSSL-Bench, a comprehensive benchmark that evaluates nineteen SSL methods. Our evaluation spans nine datasets and focuses on three common downstream tasks: batch correction, cell type annotation, and missing modality prediction. Furthermore, we systematically assess various data augmentation strategies. Our analysis reveals task-specific trade-offs: the specialized single-cell frameworks, scVI, CLAIRE, and the finetuned scGPT excel at uni-modal batch correction, while generic SSL methods, such as VICReg and SimCLR, demonstrate superior performance in cell typing and multi-modal data integration. Random masking emerges as the most effective augmentation technique across all tasks, surpassing domain-specific augmentations. Notably, our results indicate the need for a specialized single-cell multi-modal data integration framework. scSSL-Bench provides a standardized evaluation platform and concrete recommendations for applying SSL to single-cell analysis, advancing the convergence of deep learning and single-cell genomics.
How cost-effectively can we elicit strong reasoning in language models by leveraging their underlying representations? We answer this question with Resa, a family of 1.5B reasoning models trained via a novel and efficient sparse autoencoder tuning (SAE-Tuning) procedure. This method first trains an SAE to capture reasoning abilities from a source model, and then uses the trained SAE to guide a standard supervised fine-tuning process to elicit such abilities in a target model, all using verified question-answer data without any reasoning traces. Notably, when applied to certain base models before further RL post-training, SAE-Tuning retains >97% of its RL-trained counterpart's reasoning performance while reducing training costs by >2000x to roughly \$1 and training time by >450x to around 20 minutes. Furthermore, when applied to lightly RL-trained models (e.g., within 1 hour on 2 GPUs), it enables reasoning performance such as 43.33% Pass@1 on AIME24 and 90% Pass@1 on AMC23 for only around \$1 additional cost. Surprisingly, the reasoning abilities extracted via SAEs are potentially both generalizable and modular. Generality means abilities extracted from one dataset still elevate performance on a larger and overlapping corpus. Modularity means abilities extracted from Qwen or Qwen-Math can be attached to the R1-Distill model at test time, without any retraining, and yield comparable gains. Extensive ablations validate these findings and all artifacts are fully open-sourced.
Unsupervised feature selection is critical for improving clustering performance in high-dimensional data, where irrelevant features can obscure meaningful structure. In this work, we introduce the Minkowski weighted $k$-means++, a novel initialisation strategy for the Minkowski Weighted $k$-means. Our initialisation selects centroids probabilistically using feature relevance estimates derived from the data itself. Building on this, we propose two new feature selection algorithms, FS-MWK++, which aggregates feature weights across a range of Minkowski exponents to identify stable and informative features, and SFS-MWK++, a scalable variant based on subsampling. We support our approach with a theoretical guarantee under mild assumptions and extensive experiments showing that our methods consistently outperform existing alternatives. Our software can be found at https://github.com/xzhang4-ops1/FSMWK.
Sparse autoencoders (SAEs) are a popular method for decomposing Large Langage Models (LLM) activations into interpretable latents. However, due to their substantial training cost, most academic research uses open-source SAEs which are only available for a restricted set of models of up to 27B parameters. SAE latents are also learned from a dataset of activations, which means they do not transfer between models. Motivated by relative representation similarity measures, we introduce Inference-Time Decomposition of Activations (ITDA) models, an alternative method for decomposing language model activations. To train an ITDA, we greedily construct a dictionary of language model activations on a dataset of prompts, selecting those activations which were worst approximated by matching pursuit on the existing dictionary. ITDAs can be trained in just 1% of the time required for SAEs, using 1% of the data. This allowed us to train ITDAs on Llama-3.1 70B and 405B on a single consumer GPU. ITDAs can achieve similar reconstruction performance to SAEs on some target LLMs, but generally incur a performance penalty. However, ITDA dictionaries enable cross-model comparisons, and a simple Jaccard similarity index on ITDA dictionaries outperforms existing methods like CKA, SVCCA, and relative representation similarity metrics. ITDAs provide a cheap alternative to SAEs where computational resources are limited, or when cross model comparisons are necessary. Code available at https://github.com/pleask/itda.
State-space models (SSMs) and transformers dominate the language modeling landscape. However, they are constrained to a lower computational complexity than classical recurrent neural networks (RNNs), limiting their expressivity. In contrast, RNNs lack parallelization during training, raising fundamental questions about the trade off between parallelization and expressivity. We propose implicit SSMs, which iterate a transformation until convergence to a fixed point. Theoretically, we show that implicit SSMs implement the non-linear state-transitions of RNNs. Empirically, we find that only approximate fixed-point convergence suffices, enabling the design of a scalable training curriculum that largely retains parallelization, with full convergence required only for a small subset of tokens. Our approach demonstrates superior state-tracking capabilities on regular languages, surpassing transformers and SSMs. We further scale implicit SSMs to natural language reasoning tasks and pretraining of large-scale language models up to 1.3B parameters on 207B tokens representing, to our knowledge, the largest implicit model trained to date. Notably, our implicit models outperform their explicit counterparts on standard benchmarks. Our code is publicly available at http://github.com/microsoft/implicit_languagemodels .
Large language models (LLMs) are increasingly deployed in high-stakes hiring applications, making decisions that directly impact people's careers and livelihoods. While prior studies suggest simple anti-bias prompts can eliminate demographic biases in controlled evaluations, we find these mitigations fail when realistic contextual details are introduced. We address these failures through internal bias mitigation: by identifying and neutralizing sensitive attribute directions within model activations, we achieve robust bias reduction across all tested scenarios. Across leading commercial (GPT-4o, Claude 4 Sonnet, Gemini 2.5 Flash) and open-source models (Gemma-2 27B, Gemma-3, Mistral-24B), we find that adding realistic context such as company names, culture descriptions from public careers pages, and selective hiring constraints (e.g.,``only accept candidates in the top 10\%") induces significant racial and gender biases (up to 12\% differences in interview rates). When these biases emerge, they consistently favor Black over White candidates and female over male candidates across all tested models and scenarios. Moreover, models can infer demographics and become biased from subtle cues like college affiliations, with these biases remaining invisible even when inspecting the model's chain-of-thought reasoning. To address these limitations, our internal bias mitigation identifies race and gender-correlated directions and applies affine concept editing at inference time. Despite using directions from a simple synthetic dataset, the intervention generalizes robustly, consistently reducing bias to very low levels (typically under 1\%, always below 2.5\%) while largely maintaining model performance. Our findings suggest that practitioners deploying LLMs for hiring should adopt more realistic evaluation methodologies and consider internal mitigation strategies for equitable outcomes.
Obtaining high-quality labeled datasets is often costly, requiring either extensive human annotation or expensive experiments. We propose a method that supplements such "expert" labels with AI predictions from pre-trained models to construct labeled datasets more cost-effectively. Our approach results in probably approximately correct labels: with high probability, the overall labeling error is small. This solution enables rigorous yet efficient dataset curation using modern AI models. We demonstrate the benefits of the methodology through text annotation with large language models, image labeling with pre-trained vision models, and protein folding analysis with AlphaFold.
Uniform-state discrete diffusion models hold the promise of fast text generation due to their inherent ability to self-correct. However, they are typically outperformed by autoregressive models and masked diffusion models. In this work, we narrow this performance gap by leveraging a key insight: Uniform-state diffusion processes naturally emerge from an underlying Gaussian diffusion. Our method, Duo, transfers powerful techniques from Gaussian diffusion to improve both training and sampling. First, we introduce a curriculum learning strategy guided by the Gaussian process, doubling training speed by reducing variance. Models trained with curriculum learning surpass autoregressive models in zero-shot perplexity on 3 of 7 benchmarks. Second, we present Discrete Consistency Distillation, which adapts consistency distillation from the continuous to the discrete setting. This algorithm unlocks few-step generation in diffusion language models by accelerating sampling by two orders of magnitude. We provide the code and model checkpoints on the project page: http://s-sahoo.github.io/duo
Long video understanding (LVU) presents a significant challenge for current multi-modal large language models (MLLMs) due to the task's inherent complexity and context window constraint. It is widely assumed that addressing LVU tasks requires foundation MLLMs with extended context windows, strong visual perception capabilities, and proficient domain expertise. In this work, we challenge this common belief by introducing VideoDeepResearch, a novel agentic framework for long video understanding. Our approach relies solely on a text-only large reasoning model (LRM) combined with a modular multi-modal toolkit, including multimodal retrievers and visual perceivers, all of which are readily available in practice. For each LVU task, the system formulates a problem-solving strategy through reasoning, while selectively accessing and utilizing essential video content via tool using. We conduct extensive experiments on popular LVU benchmarks, including MLVU, Video-MME, and LVBench. Our results demonstrate that VideoDeepResearch achieves substantial improvements over existing MLLM baselines, surpassing the previous state-of-the-art by 9.6%, 6.6%, and 3.9% on MLVU (test), LVBench, and LongVideoBench, respectively. These findings highlight the promise of agentic systems in overcoming key challenges in LVU problems.
Determining whether an algorithmic decision-making system discriminates against a specific demographic typically involves comparing a single point estimate of a fairness metric against a predefined threshold. This practice is statistically brittle: it ignores sampling error and treats small demographic subgroups the same as large ones. The problem intensifies in intersectional analyses, where multiple sensitive attributes are considered jointly, giving rise to a larger number of smaller groups. As these groups become more granular, the data representing them becomes too sparse for reliable estimation, and fairness metrics yield excessively wide confidence intervals, precluding meaningful conclusions about potential unfair treatments. In this paper, we introduce a unified, size-adaptive, hypothesis-testing framework that turns fairness assessment into an evidence-based statistical decision. Our contribution is twofold. (i) For sufficiently large subgroups, we prove a Central-Limit result for the statistical parity difference, leading to analytic confidence intervals and a Wald test whose type-I (false positive) error is guaranteed at level $\alpha$. (ii) For the long tail of small intersectional groups, we derive a fully Bayesian Dirichlet-multinomial estimator; Monte-Carlo credible intervals are calibrated for any sample size and naturally converge to Wald intervals as more data becomes available. We validate our approach empirically on benchmark datasets, demonstrating how our tests provide interpretable, statistically rigorous decisions under varying degrees of data availability and intersectionality.
Controlling the output probabilities of softmax-based models is a common problem in modern machine learning. Although the $\mathrm{Softmax}$ function provides soft control via its temperature parameter, it lacks the ability to enforce hard constraints, such as box constraints, on output probabilities, which can be critical in certain applications requiring reliable and trustworthy models. In this work, we propose the box-constrained softmax ($\mathrm{BCSoftmax}$) function, a novel generalization of the $\mathrm{Softmax}$ function that explicitly enforces lower and upper bounds on output probabilities. While $\mathrm{BCSoftmax}$ is formulated as the solution to a box-constrained optimization problem, we develop an exact and efficient computation algorithm for $\mathrm{BCSoftmax}$. As a key application, we introduce two post-hoc calibration methods based on $\mathrm{BCSoftmax}$. The proposed methods mitigate underconfidence and overconfidence in predictive models by learning the lower and upper bounds of the output probabilities or logits after model training, thereby enhancing reliability in downstream decision-making tasks. We demonstrate the effectiveness of our methods experimentally using the TinyImageNet, CIFAR-100, and 20NewsGroups datasets, achieving improvements in calibration metrics.
Faithful evaluation of language model capabilities is crucial for deriving actionable insights that can inform model development. However, rigorous causal evaluations in this domain face significant methodological challenges, including complex confounding effects and prohibitive computational costs associated with extensive retraining. To tackle these challenges, we propose a causal representation learning framework wherein observed benchmark performance is modeled as a linear transformation of a few latent capability factors. Crucially, these latent factors are identified as causally interrelated after appropriately controlling for the base model as a common confounder. Applying this approach to a comprehensive dataset encompassing over 1500 models evaluated across six benchmarks from the Open LLM Leaderboard, we identify a concise three-node linear causal structure that reliably explains the observed performance variations. Further interpretation of this causal structure provides substantial scientific insights beyond simple numerical rankings: specifically, we reveal a clear causal direction starting from general problem-solving capabilities, advancing through instruction-following proficiency, and culminating in mathematical reasoning ability. Our results underscore the essential role of carefully controlling base model variations during evaluation, a step critical to accurately uncovering the underlying causal relationships among latent model capabilities.
Keyphrase generation refers to the task of producing a set of words or phrases that summarises the content of a document. Continuous efforts have been dedicated to this task over the past few years, spreading across multiple lines of research, such as model architectures, data resources, and use-case scenarios. Yet, the current state of keyphrase generation remains unknown as there has been no attempt to review and analyse previous work. In this paper, we bridge this gap by presenting an analysis of over 50 research papers on keyphrase generation, offering a comprehensive overview of recent progress, limitations, and open challenges. Our findings highlight several critical issues in current evaluation practices, such as the concerning similarity among commonly-used benchmark datasets and inconsistencies in metric calculations leading to overestimated performances. Additionally, we address the limited availability of pre-trained models by releasing a strong PLM-based model for keyphrase generation as an effort to facilitate future research.