Online question-and-answer (Q\&A) systems based on the Large Language Model (LLM) have progressively diverged from recreational to professional use. This paper proposed a Multi-Agent framework with environmentally reinforcement learning (E-RL) for code correction called Code Learning (Co-Learning) community, assisting beginners to correct code errors independently. It evaluates the performance of multiple LLMs from an original dataset with 702 error codes, uses it as a reward or punishment criterion for E-RL; Analyzes input error codes by the current agent; selects the appropriate LLM-based agent to achieve optimal error correction accuracy and reduce correction time. Experiment results showed that 3\% improvement in Precision score and 15\% improvement in time cost as compared with no E-RL method respectively. Our source code is available at: https://github.com/yuqian2003/Co_Learning
We introduce OLMoE, a fully open, state-of-the-art language model leveraging sparse Mixture-of-Experts (MoE). OLMoE-1B-7B has 7 billion (B) parameters but uses only 1B per input token. We pretrain it on 5 trillion tokens and further adapt it to create OLMoE-1B-7B-Instruct. Our models outperform all available models with similar active parameters, even surpassing larger ones like Llama2-13B-Chat and DeepSeekMoE-16B. We present various experiments on MoE training, analyze routing in our model showing high specialization, and open-source all aspects of our work: model weights, training data, code, and logs.
Recent advancements in Large Language Models (LLMs) are transforming biology, computer science, engineering, and every day life. However, integrating the wide array of computational tools, databases, and scientific literature continues to pose a challenge to biological research. LLMs are well-suited for unstructured integration, efficient information retrieval, and automating standard workflows and actions from these diverse resources. To harness these capabilities in bioinformatics, we present a prototype Bioinformatics Retrieval Augmented Digital assistant (BRAD). BRAD is a chatbot and agentic system that integrates a variety of bioinformatics tools. The Python package implements an AI \texttt{Agent} that is powered by LLMs and connects to a local file system, online databases, and a user's software. The \texttt{Agent} is highly configurable, enabling tasks such as Retrieval-Augmented Generation, searches across bioinformatics databases, and the execution of software pipelines. BRAD's coordinated integration of bioinformatics tools delivers a context-aware and semi-autonomous system that extends beyond the capabilities of conventional LLM-based chatbots. A graphical user interface (GUI) provides an intuitive interface to the system.
Information retrieval methods often rely on a single embedding model trained on large, general-domain datasets like MSMARCO. While this approach can produce a retriever with reasonable overall performance, they often underperform models trained on domain-specific data when testing on their respective domains. Prior work in information retrieval has tackled this through multi-task training, but the idea of routing over a mixture of domain-specific expert retrievers remains unexplored despite the popularity of such ideas in language model generation research. In this work, we introduce RouterRetriever, a retrieval model that leverages a mixture of domain-specific experts by using a routing mechanism to select the most appropriate expert for each query. RouterRetriever is lightweight and allows easy addition or removal of experts without additional training. Evaluation on the BEIR benchmark demonstrates that RouterRetriever outperforms both models trained on MSMARCO (+2.1 absolute nDCG@10) and multi-task models (+3.2). This is achieved by employing our routing mechanism, which surpasses other routing techniques (+1.8 on average) commonly used in language modeling. Furthermore, the benefit generalizes well to other datasets, even in the absence of a specific expert on the dataset. RouterRetriever is the first work to demonstrate the advantages of routing over a mixture of domain-specific expert embedding models as an alternative to a single, general-purpose embedding model, especially when retrieving from diverse, specialized domains.
Background and Aims: This study evaluates the medical reasoning performance of large language models (LLMs) and vision language models (VLMs) in gastroenterology. Methods: We used 300 gastroenterology board exam-style multiple-choice questions, 138 of which contain images to systematically assess the impact of model configurations and parameters and prompt engineering strategies utilizing GPT-3.5. Next, we assessed the performance of proprietary and open-source LLMs (versions), including GPT (3.5, 4, 4o, 4omini), Claude (3, 3.5), Gemini (1.0), Mistral, Llama (2, 3, 3.1), Mixtral, and Phi (3), across different interfaces (web and API), computing environments (cloud and local), and model precisions (with and without quantization). Finally, we assessed accuracy using a semiautomated pipeline. Results: Among the proprietary models, GPT-4o (73.7%) and Claude3.5-Sonnet (74.0%) achieved the highest accuracy, outperforming the top open-source models: Llama3.1-405b (64%), Llama3.1-70b (58.3%), and Mixtral-8x7b (54.3%). Among the quantized open-source models, the 6-bit quantized Phi3-14b (48.7%) performed best. The scores of the quantized models were comparable to those of the full-precision models Llama2-7b, Llama2--13b, and Gemma2-9b. Notably, VLM performance on image-containing questions did not improve when the images were provided and worsened when LLM-generated captions were provided. In contrast, a 10% increase in accuracy was observed when images were accompanied by human-crafted image descriptions. Conclusion: In conclusion, while LLMs exhibit robust zero-shot performance in medical reasoning, the integration of visual data remains a challenge for VLMs. Effective deployment involves carefully determining optimal model configurations, encouraging users to consider either the high performance of proprietary models or the flexible adaptability of open-source models.
This paper examines the performance of two Large Language Models (LLMs), GPT3.5 and Llama2 and one Small Language Model (SLM) Gemma, across three different classification tasks within the climate change (CC) and environmental domain. Employing BERT-based models as a baseline, we compare their efficacy against these transformer-based models. Additionally, we assess the models' self-evaluation capabilities by analyzing the calibration of verbalized confidence scores in these text classification tasks. Our findings reveal that while BERT-based models generally outperform both the LLMs and SLM, the performance of the large generative models is still noteworthy. Furthermore, our calibration analysis reveals that although Gemma is well-calibrated in initial tasks, it thereafter produces inconsistent results; Llama is reasonably calibrated, and GPT consistently exhibits strong calibration. Through this research, we aim to contribute to the ongoing discussion on the utility and effectiveness of generative LMs in addressing some of the planet's most urgent issues, highlighting their strengths and limitations in the context of ecology and CC.
In this work, we investigate the effectiveness of injecting external knowledge to a large language model (LLM) to identify semantic plausibility of simple events. Specifically, we enhance the LLM with fine-grained entity types, event types and their definitions extracted from an external knowledge base. These knowledge are injected into our system via designed templates. We also augment the data to balance the label distribution and adapt the task setting to real world scenarios in which event mentions are expressed as natural language sentences. The experimental results show the effectiveness of the injected knowledge on modeling semantic plausibility of events. An error analysis further emphasizes the importance of identifying non-trivial entity and event types.
Over the past decade, app store (AppStore)-inspired requirements elicitation has proven to be highly beneficial. Developers often explore competitors' apps to gather inspiration for new features. With the advance of Generative AI, recent studies have demonstrated the potential of large language model (LLM)-inspired requirements elicitation. LLMs can assist in this process by providing inspiration for new feature ideas. While both approaches are gaining popularity in practice, there is a lack of insight into their differences. We report on a comparative study between AppStore- and LLM-based approaches for refining features into sub-features. By manually analyzing 1,200 sub-features recommended from both approaches, we identified their benefits, challenges, and key differences. While both approaches recommend highly relevant sub-features with clear descriptions, LLMs seem more powerful particularly concerning novel unseen app scopes. Moreover, some recommended features are imaginary with unclear feasibility, which suggests the importance of a human-analyst in the elicitation loop.
Recent advancements in audio generation have been significantly propelled by the capabilities of Large Language Models (LLMs). The existing research on audio LLM has primarily focused on enhancing the architecture and scale of audio language models, as well as leveraging larger datasets, and generally, acoustic codecs, such as EnCodec, are used for audio tokenization. However, these codecs were originally designed for audio compression, which may lead to suboptimal performance in the context of audio LLM. Our research aims to address the shortcomings of current audio LLM codecs, particularly their challenges in maintaining semantic integrity in generated audio. For instance, existing methods like VALL-E, which condition acoustic token generation on text transcriptions, often suffer from content inaccuracies and elevated word error rates (WER) due to semantic misinterpretations of acoustic tokens, resulting in word skipping and errors. To overcome these issues, we propose a straightforward yet effective approach called X-Codec. X-Codec incorporates semantic features from a pre-trained semantic encoder before the Residual Vector Quantization (RVQ) stage and introduces a semantic reconstruction loss after RVQ. By enhancing the semantic ability of the codec, X-Codec significantly reduces WER in speech synthesis tasks and extends these benefits to non-speech applications, including music and sound generation. Our experiments in text-to-speech, music continuation, and text-to-sound tasks demonstrate that integrating semantic information substantially improves the overall performance of language models in audio generation. Our code and demo are available (Demo: https://x-codec-audio.github.io Code: https://github.com/zhenye234/xcodec)
Large Language Models (LLMs) with long context capabilities are integral to complex tasks in natural language processing and computational biology, such as text generation and protein sequence analysis. However, training LLMs directly on extremely long contexts demands considerable GPU resources and increased memory, leading to higher costs and greater complexity. Alternative approaches that introduce long context capabilities via downstream finetuning or adaptations impose significant design limitations. In this paper, we propose Fully Pipelined Distributed Transformer (FPDT) for efficiently training long-context LLMs with extreme hardware efficiency. For GPT and Llama models, we achieve a 16x increase in sequence length that can be trained on the same hardware compared to current state-of-the-art solutions. With our dedicated sequence chunk pipeline design, we can now train 8B LLM with 2 million sequence length on only 4 GPUs, while also maintaining over 55% of MFU. Our proposed FPDT is agnostic to existing training techniques and is proven to work efficiently across different LLM models.
Recent advancements in Large Language Models (LLMs) have yielded remarkable success across diverse fields. However, handling long contexts remains a significant challenge for LLMs due to the quadratic time and space complexity of attention mechanisms and the growing memory consumption of the key-value cache during generation. This work introduces MemLong: Memory-Augmented Retrieval for Long Text Generation, a method designed to enhance the capabilities of long-context language modeling by utilizing an external retriever for historical information retrieval. MemLong combines a non-differentiable ``ret-mem'' module with a partially trainable decoder-only language model and introduces a fine-grained, controllable retrieval attention mechanism that leverages semantic-level relevant chunks. Comprehensive evaluations on multiple long-context language modeling benchmarks demonstrate that MemLong consistently outperforms other state-of-the-art LLMs. More importantly, MemLong can extend the context length on a single 3090 GPU from 4k up to 80k. Our code is available at https://github.com/Bui1dMySea/MemLong
We present the "Law of Vision Representation" in multimodal large language models (MLLMs). It reveals a strong correlation between the combination of cross-modal alignment, correspondence in vision representation, and MLLM performance. We quantify the two factors using the cross-modal Alignment and Correspondence score (AC score). Through extensive experiments involving thirteen different vision representation settings and evaluations across eight benchmarks, we find that the AC score is linearly correlated to model performance. By leveraging this relationship, we are able to identify and train the optimal vision representation only, which does not require finetuning the language model every time, resulting in a 99.7% reduction in computational cost.
Large language models (LLMs) are increasingly explored as general-purpose reasoners, particularly in agentic contexts. However, their outputs remain prone to mathematical and logical errors. This is especially challenging in open-ended tasks, where unstructured outputs lack explicit ground truth and may contain subtle inconsistencies. To address this issue, we propose Logic-Enhanced Language Model Agents (LELMA), a framework that integrates LLMs with formal logic to enable validation and refinement of natural language reasoning. LELMA comprises three components: an LLM-Reasoner, an LLM-Translator, and a Solver, and employs autoformalization to translate reasoning into logic representations, which are then used to assess logical validity. Using game-theoretic scenarios such as the Prisoner's Dilemma as testbeds, we highlight the limitations of both less capable (Gemini 1.0 Pro) and advanced (GPT-4o) models in generating logically sound reasoning. LELMA achieves high accuracy in error detection and improves reasoning correctness via self-refinement, particularly in GPT-4o. The study also highlights challenges in autoformalization accuracy and in evaluation of inherently ambiguous open-ended reasoning tasks.
In the rapidly evolving field of cybersecurity, the integration of flow-level and packet-level information for real-time intrusion detection remains a largely untapped area of research. This paper introduces "XG-NID," a novel framework that, to the best of our knowledge, is the first to fuse flow-level and packet-level data within a heterogeneous graph structure, offering a comprehensive analysis of network traffic. Leveraging a heterogeneous graph neural network (GNN) with graph-level classification, XG-NID uniquely enables real-time inference while effectively capturing the intricate relationships between flow and packet payload data. Unlike traditional GNN-based methodologies that predominantly analyze historical data, XG-NID is designed to accommodate the heterogeneous nature of network traffic, providing a robust and real-time defense mechanism. Our framework extends beyond mere classification; it integrates Large Language Models (LLMs) to generate detailed, human-readable explanations and suggest potential remedial actions, ensuring that the insights produced are both actionable and comprehensible. Additionally, we introduce a new set of flow features based on temporal information, further enhancing the contextual and explainable inferences provided by our model. To facilitate practical application and accessibility, we developed "GNN4ID," an open-source tool that enables the extraction and transformation of raw network traffic into the proposed heterogeneous graph structure, seamlessly integrating flow and packet-level data. Our comprehensive quantitative comparative analysis demonstrates that XG-NID achieves an F1 score of 97\% in multi-class classification, outperforming existing baseline and state-of-the-art methods. This sets a new standard in Network Intrusion Detection Systems by combining innovative data fusion with enhanced interpretability and real-time capabilities.
Language models have been effectively applied to modeling natural signals, such as images, video, speech, and audio. A crucial component of these models is the codec tokenizer, which compresses high-dimensional natural signals into lower-dimensional discrete tokens. In this paper, we introduce WavTokenizer, which offers several advantages over previous SOTA acoustic codec models in the audio domain: 1)extreme compression. By compressing the layers of quantizers and the temporal dimension of the discrete codec, one-second audio of 24kHz sampling rate requires only a single quantizer with 40 or 75 tokens. 2)improved subjective quality. Despite the reduced number of tokens, WavTokenizer achieves state-of-the-art reconstruction quality with outstanding UTMOS scores and inherently contains richer semantic information. Specifically, we achieve these results by designing a broader VQ space, extended contextual windows, and improved attention networks, as well as introducing a powerful multi-scale discriminator and an inverse Fourier transform structure. We conducted extensive reconstruction experiments in the domains of speech, audio, and music. WavTokenizer exhibited strong performance across various objective and subjective metrics compared to state-of-the-art models. We also tested semantic information, VQ utilization, and adaptability to generative models. Comprehensive ablation studies confirm the necessity of each module in WavTokenizer. The related code, demos, and pre-trained models are available at https://github.com/jishengpeng/WavTokenizer.
Given the societal impact of unsafe content generated by large language models (LLMs), ensuring that LLM services comply with safety standards is a crucial concern for LLM service providers. Common content moderation methods are limited by an effectiveness-and-efficiency dilemma, where simple models are fragile while sophisticated models consume excessive computational resources. In this paper, we reveal for the first time that effective and efficient content moderation can be achieved by extracting conceptual features from chat-oriented LLMs, despite their initial fine-tuning for conversation rather than content moderation. We propose a practical and unified content moderation framework for LLM services, named Legilimens, which features both effectiveness and efficiency. Our red-team model-based data augmentation enhances the robustness of Legilimens against state-of-the-art jailbreaking. Additionally, we develop a framework to theoretically analyze the cost-effectiveness of Legilimens compared to other methods. We have conducted extensive experiments on five host LLMs, seventeen datasets, and nine jailbreaking methods to verify the effectiveness, efficiency, and robustness of Legilimens against normal and adaptive adversaries. A comparison of Legilimens with both commercial and academic baselines demonstrates the superior performance of Legilimens. Furthermore, we confirm that Legilimens can be applied to few-shot scenarios and extended to multi-label classification tasks.
In Large Language Model (LLM) inference, the output length of an LLM request is typically regarded as not known a priori. Consequently, most LLM serving systems employ a simple First-come-first-serve (FCFS) scheduling strategy, leading to Head-Of-Line (HOL) blocking and reduced throughput and service quality. In this paper, we reexamine this assumption -- we show that, although predicting the exact generation length of each request is infeasible, it is possible to predict the relative ranks of output lengths in a batch of requests, using learning to rank. The ranking information offers valuable guidance for scheduling requests. Building on this insight, we develop a novel scheduler for LLM inference and serving that can approximate the shortest-job-first (SJF) schedule better than existing approaches. We integrate this scheduler with the state-of-the-art LLM serving system and show significant performance improvement in several important applications: 2.8x lower latency in chatbot serving and 6.5x higher throughput in synthetic data generation. Our code is available at https://github.com/hao-ai-lab/vllm-ltr.git
Understanding the learning process and the embedded computation in transformers is becoming a central goal for the development of interpretable AI. In the present study, we introduce a hierarchical filtering procedure for data models of sequences on trees, allowing us to hand-tune the range of positional correlations in the data. Leveraging this controlled setting, we provide evidence that vanilla encoder-only transformers can approximate the exact inference algorithm when trained on root classification and masked language modeling tasks, and study how this computation is discovered and implemented. We find that correlations at larger distances, corresponding to increasing layers of the hierarchy, are sequentially included by the network during training. By comparing attention maps from models trained with varying degrees of filtering and by probing the different encoder levels, we find clear evidence of a reconstruction of correlations on successive length scales corresponding to the various levels of the hierarchy, which we relate to a plausible implementation of the exact inference algorithm within the same architecture.
Known as low energy consumption networks, spiking neural networks (SNNs) have gained a lot of attention within the past decades. While SNNs are increasing competitive with artificial neural networks (ANNs) for vision tasks, they are rarely used for long sequence tasks, despite their intrinsic temporal dynamics. In this work, we develop spiking state space models (SpikingSSMs) for long sequence learning by leveraging on the sequence learning abilities of state space models (SSMs). Inspired by dendritic neuron structure, we hierarchically integrate neuronal dynamics with the original SSM block, meanwhile realizing sparse synaptic computation. Furthermore, to solve the conflict of event-driven neuronal dynamics with parallel computing, we propose a light-weight surrogate dynamic network which accurately predicts the after-reset membrane potential and compatible to learnable thresholds, enabling orders of acceleration in training speed compared with conventional iterative methods. On the long range arena benchmark task, SpikingSSM achieves competitive performance to state-of-the-art SSMs meanwhile realizing on average 90\% of network sparsity. On language modeling, our network significantly surpasses existing spiking large language models (spikingLLMs) on the WikiText-103 dataset with only a third of the model size, demonstrating its potential as backbone architecture for low computation cost LLMs.
We introduce SHADOW, a fine-tuned language model trained on an intermediate task using associative deductive reasoning, and measure its performance on a knowledge base construction task using Wikidata triple completion. We evaluate SHADOW on the LM-KBC 2024 challenge and show that it outperforms the baseline solution by 20% with a F1 score of 68.72%.