Inferring missing facts in temporal knowledge graphs (TKGs) is a fundamental and challenging task. Previous works have approached this problem by augmenting methods for static knowledge graphs to leverage time-dependent representations. However, these methods do not explicitly leverage multi-hop structural information and temporal facts from recent time steps to enhance their predictions. Additionally, prior work does not explicitly address the temporal sparsity and variability of entity distributions in TKGs. We propose the Temporal Message Passing (TeMP) framework to address these challenges by combining graph neural networks, temporal dynamics models, data imputation and frequency-based gating techniques. Experiments on standard TKG tasks show that our approach provides substantial gains compared to the previous state of the art, achieving a 10.7% average relative improvement in Hits@10 across three standard benchmarks. Our analysis also reveals important sources of variability both within and across TKG datasets, and we introduce several simple but strong baselines that outperform the prior state of the art in certain settings.
Thanks to the increasing availability of drug-drug interactions (DDI) datasets and large biomedical knowledge graphs (KGs), accurate detection of adverse DDI using machine learning models becomes possible. However, it remains largely an open problem how to effectively utilize large and noisy biomedical KG for DDI detection. Due to its sheer size and amount of noise in KGs, it is often less beneficial to directly integrate KGs with other smaller but higher quality data (e.g., experimental data). Most of the existing approaches ignore KGs altogether. Some try to directly integrate KGs with other data via graph neural networks with limited success. Furthermore, most previous works focus on binary DDI prediction whereas the multi-typed DDI pharmacological effect prediction is a more meaningful but harder task. To fill the gaps, we propose a new method SumGNN: knowledge summarization graph neural network, which is enabled by a subgraph extraction module that can efficiently anchor on relevant subgraphs from a KG, a self-attention based subgraph summarization scheme to generate a reasoning path within the subgraph, and a multi-channel knowledge and data integration module that utilizes massive external biomedical knowledge for significantly improved multi-typed DDI predictions. SumGNN outperforms the best baseline by up to 5.54\%, and the performance gain is particularly significant in low data relation types. In addition, SumGNN provides interpretable prediction via the generated reasoning paths for each prediction.
Capturing associations for knowledge graphs (KGs) through entity alignment, entity type inference and other related tasks benefits NLP applications with comprehensive knowledge representations. Recent related methods built on Euclidean embeddings are challenged by the hierarchical structures and different scales of KGs. They also depend on high embedding dimensions to realize enough expressiveness. Differently, we explore with low-dimensional hyperbolic embeddings for knowledge association. We propose a hyperbolic relational graph neural network for KG embedding and capture knowledge associations with a hyperbolic transformation. Extensive experiments on entity alignment and type inference demonstrate the effectiveness and efficiency of our method.
Semantic embedding of knowledge graphs has been widely studied and used for prediction and statistical analysis tasks across various domains such as Natural Language Processing and the Semantic Web. However, less attention has been paid to developing robust methods for embedding OWL (Web Ontology Language) ontologies which can express a much wider range of semantics than knowledge graphs and have been widely adopted in domains such as bioinformatics. In this paper, we propose a random walk and word embedding based ontology embedding method named OWL2Vec*, which encodes the semantics of an OWL ontology by taking into account its graph structure, lexical information and logical constructors. Our empirical evaluation with three real world datasets suggests that OWL2Vec* benefits from these three different aspects of an ontology in class membership prediction and class subsumption prediction tasks. Furthermore, OWL2Vec* often significantly outperforms the state-of-the-art methods in our experiments.
Several recent efforts have been devoted to enhancing pre-trained language models (PLMs) by utilizing extra heterogeneous knowledge in knowledge graphs (KGs) and achieved consistent improvements on various knowledge-driven NLP tasks. However, most of these knowledge-enhanced PLMs embed static sub-graphs of KGs ("knowledge context"), regardless of that the knowledge required by PLMs may change dynamically according to specific text ("textual context"). In this paper, we propose a novel framework named Coke to dynamically select contextual knowledge and embed knowledge context according to textual context for PLMs, which can avoid the effect of redundant and ambiguous knowledge in KGs that cannot match the input text. Our experimental results show that Coke outperforms various baselines on typical knowledge-driven NLP tasks, indicating the effectiveness of utilizing dynamic knowledge context for language understanding. Besides the performance improvements, the dynamically selected knowledge in Coke can describe the semantics of text-related knowledge in a more interpretable form than the conventional PLMs. Our source code and datasets will be available to provide more details for Coke.
This work studies the use of visual semantic representations to align entities in heterogeneous knowledge graphs (KGs). Images are natural components of many existing KGs. By combining visual knowledge with other auxiliary information, we show that the proposed new approach, EVA, creates a holistic entity representation that provides strong signals for cross-graph entity alignment. Besides, previous entity alignment methods require human labelled seed alignment, restricting availability. EVA provides a completely unsupervised solution by leveraging the visual similarity of entities to create an initial seed dictionary (visual pivots). Experiments on benchmark data sets DBP15k and DWY15k show that EVA offers state-of-the-art performance on both monolingual and cross-lingual entity alignment tasks. Furthermore, we discover that images are particularly useful to align long-tail KG entities, which inherently lack the structural contexts necessary for capturing the correspondences.
We propose a simple yet effective embedding model to learn quaternion embeddings for entities and relations in knowledge graphs. Our model aims to enhance correlations between head and tail entities given a relation within the Quaternion space with Hamilton product. The model achieves this goal by further associating each relation with two relation-aware rotations, which are used to rotate quaternion embeddings of the head and tail entities, respectively. Experimental results show that our proposed model produces state-of-the-art performances on well-known benchmark datasets for knowledge graph completion. Our code is available at: \url{https://github.com/daiquocnguyen/QuatRE}.
While the advent of Graph Neural Networks (GNNs) has greatly improved node and graph representation learning in many applications, the neighborhood aggregation scheme exposes additional vulnerabilities to adversaries seeking to extract node-level information about sensitive attributes. In this paper, we study the problem of protecting sensitive attributes by information obfuscation when learning with graph structured data. We propose a framework to locally filter out pre-determined sensitive attributes via adversarial training with the total variation and the Wasserstein distance. Our method creates a strong defense against inference attacks, while only suffering small loss in task performance. Theoretically, we analyze the effectiveness of our framework against a worst-case adversary, and characterize an inherent trade-off between maximizing predictive accuracy and minimizing information leakage. Experiments across multiple datasets from recommender systems, knowledge graphs and quantum chemistry demonstrate that the proposed approach provides a robust defense across various graph structures and tasks, while producing competitive GNN encoders for downstream tasks.
Hyper-relational knowledge graphs (KGs) (e.g., Wikidata) enable associating additional key-value pairs along with the main triple to disambiguate, or restrict the validity of a fact. In this work, we propose a message passing based graph encoder - StarE capable of modeling such hyper-relational KGs. Unlike existing approaches, StarE can encode an arbitrary number of additional information (qualifiers) along with the main triple while keeping the semantic roles of qualifiers and triples intact. We also demonstrate that existing benchmarks for evaluating link prediction (LP) performance on hyper-relational KGs suffer from fundamental flaws and thus develop a new Wikidata-based dataset - WD50K. Our experiments demonstrate that StarE based LP model outperforms existing approaches across multiple benchmarks. We also confirm that leveraging qualifiers is vital for link prediction with gains up to 25 MRR points compared to triple-based representations.
Sentence embeddings encode natural language sentences as low-dimensional dense vectors. A great deal of effort has been put into using sentence embeddings to improve several important natural language processing tasks. Relation extraction is such an NLP task that aims at identifying structured relations defined in a knowledge base from unstructured text. A promising and more efficient approach would be to embed both the text and structured knowledge in low-dimensional spaces and discover semantic alignments or mappings between them. Although a number of techniques have been proposed in the literature for embedding both sentences and knowledge graphs, little is known about the structural and semantic properties of these embedding spaces in terms of relation extraction. In this paper, we investigate the aforementioned properties by evaluating the extent to which sentences carrying similar senses are embedded in close proximity sub-spaces, and if we can exploit that structure to align sentences to a knowledge graph. We propose a set of experiments using a widely-used large-scale data set for relation extraction and focusing on a set of key sentence embedding methods. We additionally provide the code for reproducing these experiments at https://github.com/akalino/semantic-structural-sentences. These embedding methods cover a wide variety of techniques ranging from simple word embedding combination to transformer-based BERT-style model. Our experimental results show that different embedding spaces have different degrees of strength for the structural and semantic properties. These results provide useful information for developing embedding-based relation extraction methods.
Knowledge graphs capture entities and relations from long documents and can facilitate reasoning in many downstream applications. Extracting compact knowledge graphs containing only salient entities and relations is important but challenging for understanding and summarizing long documents. We introduce a new text-to-graph task of predicting summarized knowledge graphs from long documents. We develop a dataset of 200k document/graph pairs using automatic and human annotations. We also develop strong baselines for this task based on graph learning and text summarization, and provide quantitative and qualitative studies of their effect.
We present CoDEx, a set of knowledge graph completion datasets extracted from Wikidata and Wikipedia that improve upon existing knowledge graph completion benchmarks in scope and level of difficulty. In terms of scope, CoDEx comprises three knowledge graphs varying in size and structure, multilingual descriptions of entities and relations, and tens of thousands of hard negative triples that are plausible but verified to be false. To characterize CoDEx, we contribute thorough empirical analyses and benchmarking experiments. First, we analyze each CoDEx dataset in terms of logical relation patterns. Next, we report baseline link prediction and triple classification results on CoDEx for five extensively tuned embedding models. Finally, we differentiate CoDEx from the popular FB15K-237 knowledge graph completion dataset by showing that CoDEx covers more diverse and interpretable content, and is a more difficult link prediction benchmark. Data, code, and pretrained models are available at https://bit.ly/2EPbrJs.
Knowledge graph embedding approaches represent nodes and edges of graphs as mathematical vectors. Current approaches focus on embedding complete knowledge graphs, i.e. all nodes and edges. This leads to very high computational requirements on large graphs such as DBpedia or Wikidata. However, for most downstream application scenarios, only a small subset of concepts is of actual interest. In this paper, we present RDF2Vec Light, a lightweight embedding approach based on RDF2Vec which generates vectors for only a subset of entities. To that end, RDF2Vec Light only traverses and processes a subgraph of the knowledge graph. Our method allows the application of embeddings of very large knowledge graphs in scenarios where such embeddings were not possible before due to a significantly lower runtime and significantly reduced hardware requirements.
Based on Semantic Web technologies, knowledge graphs help users to discover information of interest by using live SPARQL services. Answer-seekers often examine intermediate results iteratively and modify SPARQL queries repeatedly in a search session. In this context, understanding user behaviors is critical for effective intention prediction and query optimization. However, these behaviors have not yet been researched systematically at the SPARQL session level. This paper reveals secrets of session-level user search behaviors by conducting a comprehensive investigation over massive real-world SPARQL query logs. In particular, we thoroughly assess query changes made by users w.r.t. structural and data-driven features of SPARQL queries. To illustrate the potentiality of our findings, we employ an application example of how to use our findings, which might be valuable to devise efficient SPARQL caching, auto-completion, query suggestion, approximation, and relaxation techniques in the future.
Graph neural networks (GNNs) have achieved superior performance in various applications, but training dedicated GNNs can be costly for large-scale graphs. Some recent work started to study the pre-training of GNNs. However, none of them provide theoretical insights into the design of their frameworks, or clear requirements and guarantees towards their transferability. In this work, we establish a theoretically grounded and practically useful framework for the transfer learning of GNNs. Firstly, we propose a novel view towards the essential graph information and advocate the capturing of it as the goal of transferable GNN training, which motivates the design of EGI (Ego-Graph Information maximization) to analytically achieve this goal. Secondly, when node features are structure-relevant, we conduct an analysis of EGI transferability regarding the difference between the local graph Laplacians of the source and target graphs. We conduct controlled synthetic experiments to directly justify our theoretical conclusions. Comprehensive experiments on two real-world network datasets show consistent results in the analyzed setting of direct-transfering, while those on large-scale knowledge graphs show promising results in the more practical setting of transfering with fine-tuning.
Dialogue relation extraction (DRE) aims to detect the relation between two entities mentioned in a multi-party dialogue. It plays an important role in constructing knowledge graphs from conversational data increasingly abundant on the internet and facilitating intelligent dialogue system development. The prior methods of DRE do not meaningfully leverage speaker information-they just prepend the utterances with the respective speaker names. Thus, they fail to model the crucial inter-speaker relations that may give additional context to relevant argument entities through pronouns and triggers. We, however, present a graph attention network-based method for DRE where a graph, that contains meaningfully connected speaker, entity, entity-type, and utterance nodes, is constructed. This graph is fed to a graph attention network for context propagation among relevant nodes, which effectively captures the dialogue context. We empirically show that this graph-based approach quite effectively captures the relations between different entity pairs in a dialogue as it outperforms the state-of-the-art approaches by a significant margin on the benchmark dataset DialogRE. Our code is released at: https://github.com/declare-lab/dialog-HGAT
As KGs are symbolic constructs, specialized techniques have to be applied in order to make them compatible with data mining techniques. RDF2Vec is an unsupervised technique that can create task-agnostic numerical representations of the nodes in a KG by extending successful language modelling techniques. The original work proposed the Weisfeiler-Lehman (WL) kernel to improve the quality of the representations. However, in this work, we show both formally and empirically that the WL kernel does little to improve walk embeddings in the context of a single KG. As an alternative to the WL kernel, we propose five different strategies to extract information complementary to basic random walks. We compare these walks on several benchmark datasets to show that the \emph{n-gram} strategy performs best on average on node classification tasks and that tuning the walk strategy can result in improved predictive performances.
To alleviate the cold start problem caused by collaborative filtering in recommender systems, knowledge graphs (KGs) are increasingly employed by many methods as auxiliary resources. However, existing work incorporated with KGs cannot capture the explicit long-range semantics between users and items meanwhile consider various connectivity between items. In this paper, we propose RGRec, which combines rule learning and graph neural networks (GNNs) for recommendation. RGRec first maps items to corresponding entities in KGs and adds users as new entities. Then, it automatically learns rules to model the explicit long-range semantics, and captures the connectivity between entities by aggregation to better encode various information. We show the effectiveness of RGRec on three real-world datasets. Particularly, the combination of rule learning and GNNs achieves substantial improvement compared to methods only using either of them.
RDF2vec is an embedding technique for representing knowledge graph entities in a continuous vector space. In this paper, we investigate the effect of materializing implicit A-box axioms induced by subproperties, as well as symmetric and transitive properties. While it might be a reasonable assumption that such a materialization before computing embeddings might lead to better embeddings, we conduct a set of experiments on DBpedia which demonstrate that the materialization actually has a negative effect on the performance of RDF2vec. In our analysis, we argue that despite the huge body of work devoted on completing missing information in knowledge graphs, such missing implicit information is actually a signal, not a defect, and we show examples illustrating that assumption.
Question Answering systems are generally modelled as a pipeline consisting of a sequence of steps. In such a pipeline, Entity Linking (EL) is often the first step. Several EL models first perform span detection and then entity disambiguation. In such models errors from the span detection phase cascade to later steps and result in a drop of overall accuracy. Moreover, lack of gold entity spans in training data is a limiting factor for span detector training. Hence the movement towards end-to-end EL models began where no separate span detection step is involved. In this work we present a novel approach to end-to-end EL by applying the popular Pointer Network model, which achieves competitive performance. We demonstrate this in our evaluation over three datasets on the Wikidata Knowledge Graph.