Previous successful approaches to missing modality completion rely on carefully designed fusion techniques and extensive pre-training on complete data, which can limit their generalizability in out-of-domain (OOD) scenarios. In this study, we pose a new challenge: can we develop a missing modality completion model that is both resource-efficient and robust to OOD generalization? To address this, we present a training-free framework for missing modality completion that leverages large multimodal models (LMMs). Our approach, termed the "Knowledge Bridger", is modality-agnostic and integrates generation and ranking of missing modalities. By defining domain-specific priors, our method automatically extracts structured information from available modalities to construct knowledge graphs. These extracted graphs connect the missing modality generation and ranking modules through the LMM, resulting in high-quality imputations of missing modalities. Experimental results across both general and medical domains show that our approach consistently outperforms competing methods, including in OOD generalization. Additionally, our knowledge-driven generation and ranking techniques demonstrate superiority over variants that directly employ LMMs for generation and ranking, offering insights that may be valuable for applications in other domains.
Retrieval-Augmented Generation (RAG) has demonstrated remarkable success in enhancing Large Language Models (LLMs) through external knowledge integration, yet its application has primarily focused on textual content, leaving the rich domain of multi-modal video knowledge predominantly unexplored. This paper introduces VideoRAG, the first retrieval-augmented generation framework specifically designed for processing and understanding extremely long-context videos. Our core innovation lies in its dual-channel architecture that seamlessly integrates (i) graph-based textual knowledge grounding for capturing cross-video semantic relationships, and (ii) multi-modal context encoding for efficiently preserving visual features. This novel design empowers VideoRAG to process unlimited-length videos by constructing precise knowledge graphs that span multiple videos while maintaining semantic dependencies through specialized multi-modal retrieval paradigms. Through comprehensive empirical evaluation on our proposed LongerVideos benchmark-comprising over 160 videos totaling 134+ hours across lecture, documentary, and entertainment categories-VideoRAG demonstrates substantial performance compared to existing RAG alternatives and long video understanding methods. The source code of VideoRAG implementation and the benchmark dataset are openly available at: https://github.com/HKUDS/VideoRAG.
Our ability to continuously acquire, organize, and leverage knowledge is a key feature of human intelligence that AI systems must approximate to unlock their full potential. Given the challenges in continual learning with large language models (LLMs), retrieval-augmented generation (RAG) has become the dominant way to introduce new information. However, its reliance on vector retrieval hinders its ability to mimic the dynamic and interconnected nature of human long-term memory. Recent RAG approaches augment vector embeddings with various structures like knowledge graphs to address some of these gaps, namely sense-making and associativity. However, their performance on more basic factual memory tasks drops considerably below standard RAG. We address this unintended deterioration and propose HippoRAG 2, a framework that outperforms standard RAG comprehensively on factual, sense-making, and associative memory tasks. HippoRAG 2 builds upon the Personalized PageRank algorithm used in HippoRAG and enhances it with deeper passage integration and more effective online use of an LLM. This combination pushes this RAG system closer to the effectiveness of human long-term memory, achieving a 7% improvement in associative memory tasks over the state-of-the-art embedding model while also exhibiting superior factual knowledge and sense-making memory capabilities. This work paves the way for non-parametric continual learning for LLMs. Our code and data will be released at https://github.com/OSU-NLP-Group/HippoRAG.
Data augmentation is necessary for graph representation learning due to the scarcity and noise present in graph data. Most of the existing augmentation methods overlook the context information inherited from the dataset as they rely solely on the graph structure for augmentation. Despite the success of some large language model-based (LLM) graph learning methods, they are mostly white-box which require access to the weights or latent features from the open-access LLMs, making them difficult to be democratized for everyone as existing LLMs are mostly closed-source for commercial considerations. To overcome these limitations, we propose a black-box context-driven graph data augmentation approach, with the guidance of LLMs -- DemoGraph. Leveraging the text prompt as context-related information, we task the LLM with generating knowledge graphs (KGs), which allow us to capture the structural interactions from the text outputs. We then design a dynamic merging schema to stochastically integrate the LLM-generated KGs into the original graph during training. To control the sparsity of the augmented graph, we further devise a granularity-aware prompting strategy and an instruction fine-tuning module, which seamlessly generates text prompts according to different granularity levels of the dataset. Extensive experiments on various graph learning tasks validate the effectiveness of our method over existing graph data augmentation methods. Notably, our approach excels in scenarios involving electronic health records (EHRs), which validates its maximal utilization of contextual knowledge, leading to enhanced predictive performance and interpretability.
Biomedical knowledge graphs (KGs) encode rich, structured information critical for drug discovery tasks, but extracting meaningful insights from large-scale KGs remains challenging due to their complex structure. Existing biomedical subgraph retrieval methods are tailored for graph neural networks (GNNs), limiting compatibility with other paradigms, including large language models (LLMs). We introduce K-Paths, a model-agnostic retrieval framework that extracts structured, diverse, and biologically meaningful multi-hop paths from dense biomedical KGs. These paths enable the prediction of unobserved drug-drug and drug-disease interactions, including those involving entities not seen during training, thus supporting inductive reasoning. K-Paths is training-free and employs a diversity-aware adaptation of Yen's algorithm to extract the K shortest loopless paths between entities in a query, prioritizing biologically relevant and relationally diverse connections. These paths serve as concise, interpretable reasoning chains that can be directly integrated with LLMs or GNNs to improve generalization, accuracy, and enable explainable inference. Experiments on benchmark datasets show that K-Paths improves zero-shot reasoning across state-of-the-art LLMs. For instance, Tx-Gemma 27B improves by 19.8 and 4.0 F1 points on interaction severity prediction and drug repurposing tasks, respectively. Llama 70B achieves gains of 8.5 and 6.2 points on the same tasks. K-Paths also boosts the training efficiency of EmerGNN, a state-of-the-art GNN, by reducing the KG size by 90% while maintaining predictive performance. Beyond efficiency, K-Paths bridges the gap between KGs and LLMs, enabling scalable and explainable LLM-augmented scientific discovery. We release our code and the retrieved paths as a benchmark for inductive reasoning.
Large language models (LLMs) have achieved impressive performance on knowledge-intensive tasks, yet they often struggle with multi-step reasoning due to the unstructured nature of retrieved context. While retrieval-augmented generation (RAG) methods provide external information, the lack of explicit organization among retrieved passages limits their effectiveness, leading to brittle reasoning pathways. Recent interpretability studies highlighting the importance of structured intermediate reasoning further align with this perspective. We propose Retrieval-And-Structuring (RAS), a framework that dynamically constructs query-specific knowledge graphs through iterative retrieval and structured knowledge building. RAS interleaves targeted retrieval planning with incremental graph construction, enabling models to assemble and reason over evolving knowledge structures tailored to each query. On seven knowledge-intensive benchmarks, RAS consistently outperforms strong baselines, achieving up to 6.4% and 7.0% gains with open-source and proprietary LLMs, respectively. Our results demonstrate that dynamic, query-specific knowledge structuring offers a robust path to improving reasoning accuracy and robustness in language model generation. Our data and code can be found at https://github.com/pat-jj/RAS.
Graph-RAG constructs a knowledge graph from text chunks to improve retrieval in Large Language Model (LLM)-based question answering. It is particularly useful in domains such as biomedicine, law, and political science, where retrieval often requires multi-hop reasoning over proprietary documents. Some existing Graph-RAG systems construct KNN graphs based on text chunk relevance, but this coarse-grained approach fails to capture entity relationships within texts, leading to sub-par retrieval and generation quality. To address this, recent solutions leverage LLMs to extract entities and relationships from text chunks, constructing triplet-based knowledge graphs. However, this approach incurs significant indexing costs, especially for large document collections. To ensure a good result accuracy while reducing the indexing cost, we propose KET-RAG, a multi-granular indexing framework. KET-RAG first identifies a small set of key text chunks and leverages an LLM to construct a knowledge graph skeleton. It then builds a text-keyword bipartite graph from all text chunks, serving as a lightweight alternative to a full knowledge graph. During retrieval, KET-RAG searches both structures: it follows the local search strategy of existing Graph-RAG systems on the skeleton while mimicking this search on the bipartite graph to improve retrieval quality. We evaluate eight solutions on two real-world datasets, demonstrating that KET-RAG outperforms all competitors in indexing cost, retrieval effectiveness, and generation quality. Notably, it achieves comparable or superior retrieval quality to Microsoft's Graph-RAG while reducing indexing costs by over an order of magnitude. Additionally, it improves the generation quality by up to 32.4% while lowering indexing costs by around 20%.
Retrieval-augmented generation (RAG) has emerged as a promising technology for addressing hallucination issues in the responses generated by large language models (LLMs). Existing studies on RAG primarily focus on applying semantic-based approaches to retrieve isolated relevant chunks, which ignore their intrinsic relationships. In this paper, we propose a novel Knowledge Graph-Guided Retrieval Augmented Generation (KG$^2$RAG) framework that utilizes knowledge graphs (KGs) to provide fact-level relationships between chunks, improving the diversity and coherence of the retrieved results. Specifically, after performing a semantic-based retrieval to provide seed chunks, KG$^2$RAG employs a KG-guided chunk expansion process and a KG-based chunk organization process to deliver relevant and important knowledge in well-organized paragraphs. Extensive experiments conducted on the HotpotQA dataset and its variants demonstrate the advantages of KG$^2$RAG compared to existing RAG-based approaches, in terms of both response quality and retrieval quality.
Maintaining comprehensive and up-to-date knowledge graphs (KGs) is critical for modern AI systems, but manual curation struggles to scale with the rapid growth of scientific literature. This paper presents KARMA, a novel framework employing multi-agent large language models (LLMs) to automate KG enrichment through structured analysis of unstructured text. Our approach employs nine collaborative agents, spanning entity discovery, relation extraction, schema alignment, and conflict resolution that iteratively parse documents, verify extracted knowledge, and integrate it into existing graph structures while adhering to domain-specific schema. Experiments on 1,200 PubMed articles from three different domains demonstrate the effectiveness of KARMA in knowledge graph enrichment, with the identification of up to 38,230 new entities while achieving 83.1\% LLM-verified correctness and reducing conflict edges by 18.6\% through multi-layer assessments.
Most existing Knowledge Graph Question Answering (KGQA) approaches are designed for a specific KG, such as Wikidata, DBpedia or Freebase. Due to the heterogeneity of the underlying graph schema, topology and assertions, most KGQA systems cannot be transferred to unseen Knowledge Graphs (KGs) without resource-intensive training data. We present OntoSCPrompt, a novel Large Language Model (LLM)-based KGQA approach with a two-stage architecture that separates semantic parsing from KG-dependent interactions. OntoSCPrompt first generates a SPARQL query structure (including SPARQL keywords such as SELECT, ASK, WHERE and placeholders for missing tokens) and then fills them with KG-specific information. To enhance the understanding of the underlying KG, we present an ontology-guided, hybrid prompt learning strategy that integrates KG ontology into the learning process of hybrid prompts (e.g., discrete and continuous vectors). We also present several task-specific decoding strategies to ensure the correctness and executability of generated SPARQL queries in both stages. Experimental results demonstrate that OntoSCPrompt performs as well as SOTA approaches without retraining on a number of KGQA datasets such as CWQ, WebQSP and LC-QuAD 1.0 in a resource-efficient manner and can generalize well to unseen domain-specific KGs like DBLP-QuAD and CoyPu KG Code: \href{https://github.com/LongquanJiang/OntoSCPrompt}{https://github.com/LongquanJiang/OntoSCPrompt}
An embodied agent assisting humans is often asked to complete new tasks, and there may not be sufficient time or labeled examples to train the agent to perform these new tasks. Large Language Models (LLMs) trained on considerable knowledge across many domains can be used to predict a sequence of abstract actions for completing such tasks, although the agent may not be able to execute this sequence due to task-, agent-, or domain-specific constraints. Our framework addresses these challenges by leveraging the generic predictions provided by LLM and the prior domain knowledge encoded in a Knowledge Graph (KG), enabling an agent to quickly adapt to new tasks. The robot also solicits and uses human input as needed to refine its existing knowledge. Based on experimental evaluation in the context of cooking and cleaning tasks in simulation domains, we demonstrate that the interplay between LLM, KG, and human input leads to substantial performance gains compared with just using the LLM. Project website{\S}: https://sssshivvvv.github.io/adaptbot/
Retrieval-augmented generation (RAG) has proven effective in integrating knowledge into large language models (LLMs). However, conventional RAGs struggle to capture complex relationships between pieces of knowledge, limiting their performance in intricate reasoning that requires integrating knowledge from multiple sources. Recently, graph-enhanced retrieval augmented generation (GraphRAG) builds graph structure to explicitly model these relationships, enabling more effective and efficient retrievers. Nevertheless, its performance is still hindered by the noise and incompleteness within the graph structure. To address this, we introduce GFM-RAG, a novel graph foundation model (GFM) for retrieval augmented generation. GFM-RAG is powered by an innovative graph neural network that reasons over graph structure to capture complex query-knowledge relationships. The GFM with 8M parameters undergoes a two-stage training process on large-scale datasets, comprising 60 knowledge graphs with over 14M triples and 700k documents. This results in impressive performance and generalizability for GFM-RAG, making it the first graph foundation model applicable to unseen datasets for retrieval without any fine-tuning required. Extensive experiments on three multi-hop QA datasets and seven domain-specific RAG datasets demonstrate that GFM-RAG achieves state-of-the-art performance while maintaining efficiency and alignment with neural scaling laws, highlighting its potential for further improvement.
Knowledge Graphs (KGs) store human knowledge in the form of entities (nodes) and relations, and are used extensively in various applications. KG embeddings are an effective approach to addressing tasks like knowledge discovery, link prediction, and reasoning. This is often done by allocating and learning embedding tables for all or a subset of the entities. As this scales linearly with the number of entities, learning embedding models in real-world KGs with millions of nodes can be computationally intractable. To address this scalability problem, our model, PathE, only allocates embedding tables for relations (which are typically orders of magnitude fewer than the entities) and requires less than 25% of the parameters of previous parameter efficient methods. Rather than storing entity embeddings, we learn to compute them by leveraging multiple entity-relation paths to contextualise individual entities within triples. Evaluated on four benchmarks, PathE achieves state-of-the-art performance in relation prediction, and remains competitive in link prediction on path-rich KGs while training on consumer-grade hardware. We perform ablation experiments to test our design choices and analyse the sensitivity of the model to key hyper-parameters. PathE is efficient and cost-effective for relationally diverse and well-connected KGs commonly found in real-world applications.
This paper presents VDAct, a dataset for a Video-grounded Dialogue on Event-driven Activities, alongside VDEval, a session-based context evaluation metric specially designed for the task. Unlike existing datasets, VDAct includes longer and more complex video sequences that depict a variety of event-driven activities that require advanced contextual understanding for accurate response generation. The dataset comprises 3,000 dialogues with over 30,000 question-and-answer pairs, derived from 1,000 videos with diverse activity scenarios. VDAct displays a notably challenging characteristic due to its broad spectrum of activity scenarios and wide range of question types. Empirical studies on state-of-the-art vision foundation models highlight their limitations in addressing certain question types on our dataset. Furthermore, VDEval, which integrates dialogue session history and video content summaries extracted from our supplementary Knowledge Graphs to evaluate individual responses, demonstrates a significantly higher correlation with human assessments on the VDAct dataset than existing evaluation metrics that rely solely on the context of single dialogue turns.
In knowledge-intensive tasks, especially in high-stakes domains like medicine and law, it is critical not only to retrieve relevant information but also to provide causal reasoning and explainability. Large language models (LLMs) have achieved remarkable performance in natural language understanding and generation tasks. However, they often suffer from limitations such as difficulty in incorporating new knowledge, generating hallucinations, and explaining their reasoning process. To address these challenges, integrating knowledge graphs with Graph Retrieval-Augmented Generation (Graph RAG) has emerged as an effective solution. Traditional Graph RAG methods often rely on simple graph traversal or semantic similarity, which do not capture causal relationships or align well with the model's internal reasoning steps. This paper proposes a novel pipeline that filters large knowledge graphs to emphasize cause-effect edges, aligns the retrieval process with the model's chain-of-thought (CoT), and enhances reasoning through multi-stage path improvements. Experiments on medical question-answering tasks show consistent gains, with up to a 10\% absolute improvement across multiple large language models (LLMs). This approach demonstrates the value of combining causal reasoning with stepwise retrieval, leading to more interpretable and logically grounded solutions for complex queries.
Multimodal Knowledge Graph Completion (MMKGC) aims to address the critical issue of missing knowledge in multimodal knowledge graphs (MMKGs) for their better applications. However, both the previous MMGKC and negative sampling (NS) approaches ignore the employment of multimodal information to generate diverse and high-quality negative triples from various semantic levels and hardness levels, thereby limiting the effectiveness of training MMKGC models. Thus, we propose a novel Diffusion-based Hierarchical Negative Sampling (DHNS) scheme tailored for MMKGC tasks, which tackles the challenge of generating high-quality negative triples by leveraging a Diffusion-based Hierarchical Embedding Generation (DiffHEG) that progressively conditions on entities and relations as well as multimodal semantics. Furthermore, we develop a Negative Triple-Adaptive Training (NTAT) strategy that dynamically adjusts training margins associated with the hardness level of the synthesized negative triples, facilitating a more robust and effective learning procedure to distinguish between positive and negative triples. Extensive experiments on three MMKGC benchmark datasets demonstrate that our framework outperforms several state-of-the-art MMKGC models and negative sampling techniques, illustrating the effectiveness of our DHNS for training MMKGC models. The source codes and datasets of this paper are available at https://github.com/ngl567/DHNS.
Knowledge graphs are widely used in industrial applications, making error detection crucial for ensuring the reliability of downstream applications. Existing error detection methods often fail to effectively utilize fine-grained subgraph information and rely solely on fixed graph structures, while also lacking transparency in their decision-making processes, which results in suboptimal detection performance. In this paper, we propose a novel Multi-Agent framework for Knowledge Graph Error Detection (MAKGED) that utilizes multiple large language models (LLMs) in a collaborative setting. By concatenating fine-grained, bidirectional subgraph embeddings with LLM-based query embeddings during training, our framework integrates these representations to produce four specialized agents. These agents utilize subgraph information from different dimensions to engage in multi-round discussions, thereby improving error detection accuracy and ensuring a transparent decision-making process. Extensive experiments on FB15K and WN18RR demonstrate that MAKGED outperforms state-of-the-art methods, enhancing the accuracy and robustness of KG evaluation. For specific industrial scenarios, our framework can facilitate the training of specialized agents using domain-specific knowledge graphs for error detection, which highlights the potential industrial application value of our framework. Our code and datasets are available at https://github.com/kse-ElEvEn/MAKGED.
Dialogue benchmarks are crucial in training and evaluating chatbots engaging in domain-specific conversations. Knowledge graphs (KGs) represent semantically rich and well-organized data spanning various domains, such as DBLP, DBpedia, and YAGO. Traditionally, dialogue benchmarks have been manually created from documents, neglecting the potential of KGs in automating this process. Some question-answering benchmarks are automatically generated using extensive preprocessing from KGs, but they do not support dialogue generation. This paper introduces Chatty-Gen, a novel multi-stage retrieval-augmented generation platform for automatically generating high-quality dialogue benchmarks tailored to a specific domain using a KG. Chatty-Gen decomposes the generation process into manageable stages and uses assertion rules for automatic validation between stages. Our approach enables control over intermediate results to prevent time-consuming restarts due to hallucinations. It also reduces reliance on costly and more powerful commercial LLMs. Chatty-Gen eliminates upfront processing of the entire KG using efficient query-based retrieval to find representative subgraphs based on the dialogue context. Our experiments with several real and large KGs demonstrate that Chatty-Gen significantly outperforms state-of-the-art systems and ensures consistent model and system performance across multiple LLMs of diverse capabilities, such as GPT-4o, Gemini 1.5, Llama 3, and Mistral.
Identifying reliable synthesis pathways in materials chemistry is a complex task, particularly in polymer science, due to the intricate and often non-unique nomenclature of macromolecules. To address this challenge, we propose an agent system that integrates large language models (LLMs) and knowledge graphs (KGs). By leveraging LLMs' powerful capabilities for extracting and recognizing chemical substance names, and storing the extracted data in a structured knowledge graph, our system fully automates the retrieval of relevant literatures, extraction of reaction data, database querying, construction of retrosynthetic pathway trees, further expansion through the retrieval of additional literature and recommendation of optimal reaction pathways. A novel Multi-branched Reaction Pathway Search (MBRPS) algorithm enables the exploration of all pathways, with a particular focus on multi-branched ones, helping LLMs overcome weak reasoning in multi-branched paths. This work represents the first attempt to develop a fully automated retrosynthesis planning agent tailored specially for macromolecules powered by LLMs. Applied to polyimide synthesis, our new approach constructs a retrosynthetic pathway tree with hundreds of pathways and recommends optimized routes, including both known and novel pathways, demonstrating its effectiveness and potential for broader applications.
The pursuit of automated scientific discovery has fueled progress from symbolic logic to modern AI, forging new frontiers in reasoning and pattern recognition. Transformers function as potential systems, where every possible relationship remains latent potentiality until tasks impose constraints, akin to measurement. Yet, refining their sampling requires more than probabilistic selection: solutions must conform to specific structures or rules, ensuring consistency and the invocation of general principles. We present Graph-PReFLexOR (Graph-based Preference-based Recursive Language Modeling for Exploratory Optimization of Reasoning), a framework that combines graph reasoning with symbolic abstraction to dynamically expand domain knowledge. Inspired by reinforcement learning, Graph-PReFLexOR defines reasoning as a structured mapping, where tasks yield knowledge graphs, abstract patterns, and ultimately, final answers. Inspired by category theory, it encodes concepts as nodes and their relationships as edges, supporting hierarchical inference and adaptive learning through isomorphic representations. Demonstrations include hypothesis generation, materials design, and creative reasoning, such as discovering relationships between mythological concepts like 'thin places' with materials science. We propose a 'knowledge garden growth' strategy that integrates insights across domains, promoting interdisciplinary connections. Results with a 3-billion-parameter Graph-PReFLexOR model show superior reasoning depth and adaptability, underscoring the potential for transparent, multidisciplinary AI-driven discovery. It lays the groundwork for general autonomous reasoning solutions.