Although attention mechanisms have achieved considerable progress in Transformer-based architectures across various Artificial Intelligence (AI) domains, their inner workings remain to be explored. Existing explainable methods have different emphases but are rather one-sided. They primarily analyse the attention mechanisms or gradient-based attribution while neglecting the magnitudes of input feature values or the skip-connection module. Moreover, they inevitably bring spurious noisy pixel attributions unrelated to the model's decision, hindering humans' trust in the spotted visualization result. Hence, we propose an easy-to-implement but effective way to remedy this flaw: Smooth Noise Norm Attention (SNNA). We weigh the attention by the norm of the transformed value vector and guide the label-specific signal with the attention gradient, then randomly sample the input perturbations and average the corresponding gradients to produce noise-free attribution. Instead of evaluating the explanation method on the binary or multi-class classification tasks like in previous works, we explore the more complex multi-label classification scenario in this work, i.e., the driving action prediction task, and trained a model for it specifically. Both qualitative and quantitative evaluation results show the superiority of SNNA compared to other SOTA attention-based explainable methods in generating a clearer visual explanation map and ranking the input pixel importance.
We study open-world multi-label text classification under extremely weak supervision (XWS), where the user only provides a brief description for classification objectives without any labels or ground-truth label space. Similar single-label XWS settings have been explored recently, however, these methods cannot be easily adapted for multi-label. We observe that (1) most documents have a dominant class covering the majority of content and (2) long-tail labels would appear in some documents as a dominant class. Therefore, we first utilize the user description to prompt a large language model (LLM) for dominant keyphrases of a subset of raw documents, and then construct a (initial) label space via clustering. We further apply a zero-shot multi-label classifier to locate the documents with small top predicted scores, so we can revisit their dominant keyphrases for more long-tail labels. We iterate this process to discover a comprehensive label space and construct a multi-label classifier as a novel method, X-MLClass. X-MLClass exhibits a remarkable increase in ground-truth label space coverage on various datasets, for example, a 40% improvement on the AAPD dataset over topic modeling and keyword extraction methods. Moreover, X-MLClass achieves the best end-to-end multi-label classification accuracy.
The extreme multi-label classification~(XMC) task involves learning a classifier that can predict from a large label set the most relevant subset of labels for a data instance. While deep neural networks~(DNNs) have demonstrated remarkable success in XMC problems, the task is still challenging because it must deal with a large number of output labels, which make the DNN training computationally expensive. This paper addresses the issue by exploring the use of random circular vectors, where each vector component is represented as a complex amplitude. In our framework, we can develop an output layer and loss function of DNNs for XMC by representing the final output layer as a fully connected layer that directly predicts a low-dimensional circular vector encoding a set of labels for a data instance. We conducted experiments on synthetic datasets to verify that circular vectors have better label encoding capacity and retrieval ability than normal real-valued vectors. Then, we conducted experiments on actual XMC datasets and found that these appealing properties of circular vectors contribute to significant improvements in task performance compared with a previous model using random real-valued vectors, while reducing the size of the output layers by up to 99%.
We introduce the sequence classification problem CIViC Evidence to the field of medical NLP. CIViC Evidence denotes the multi-label classification problem of assigning labels of clinical evidence to abstracts of scientific papers which have examined various combinations of genomic variants, cancer types, and treatment approaches. We approach CIViC Evidence using different language models: We fine-tune pretrained checkpoints of BERT and RoBERTa on the CIViC Evidence dataset and challenge their performance with models of the same architecture which have been pretrained on domain-specific text. In this context, we find that BiomedBERT and BioLinkBERT can outperform BERT on CIViC Evidence (+0.8% and +0.9% absolute improvement in class-support weighted F1 score). All transformer-based models show a clear performance edge when compared to a logistic regression trained on bigram tf-idf scores (+1.5 - 2.7% improved F1 score). We compare the aforementioned BERT-like models to OpenAI's GPT-4 in a few-shot setting (on a small subset of our original test dataset), demonstrating that, without additional prompt-engineering or fine-tuning, GPT-4 performs worse on CIViC Evidence than our six fine-tuned models (66.1% weighted F1 score compared to 71.8% for the best fine-tuned model). However, performance gets reasonably close to the benchmark of a logistic regression model trained on bigram tf-idf scores (67.7% weighted F1 score).
This article investigates how well deep learning models can identify web registers -- text varieties such as news reports and discussion forums -- across 16 languages. We introduce the Multilingual CORE corpora, which contain 72,504 documents annotated with a hierarchical taxonomy of 25 registers designed to cover the entire open web. Our multilingual models achieve state-of-the-art results (79% F1 score) using multi-label classification. This performance matches or exceeds previous studies that used simpler classification schemes, showing that models can perform well even with a complex register scheme at a massively multilingual scale. However, we observe a consistent performance ceiling around 77-80% F1 score across all models and configurations. When we remove documents with uncertain labels through data pruning, performance increases to over 90% F1, suggesting that this ceiling stems from inherent ambiguity in web registers rather than model limitations. Analysis of hybrid documents -- texts combining multiple registers -- reveals that the main challenge is not in classifying hybrids themselves, but in distinguishing between hybrid and non-hybrid documents. Multilingual models consistently outperform monolingual ones, particularly helping languages with limited training data. While zero-shot performance drops by an average of 7% on unseen languages, this decrease varies substantially between languages (from 3% to 20%), indicating that while registers share many features across languages, they also maintain language-specific characteristics.
Cross-silo federated learning (FL) enables decentralized organizations to collaboratively train models while preserving data privacy and has made significant progress in medical image classification. One common assumption is task homogeneity where each client has access to all classes during training. However, in clinical practice, given a multi-label classification task, constrained by the level of medical knowledge and the prevalence of diseases, each institution may diagnose only partial categories, resulting in task heterogeneity. How to pursue effective multi-label medical image classification under task heterogeneity is under-explored. In this paper, we first formulate such a realistic label missing setting in the multi-label FL domain and propose a two-stage method FedMLP to combat class missing from two aspects: pseudo label tagging and global knowledge learning. The former utilizes a warmed-up model to generate class prototypes and select samples with high confidence to supplement missing labels, while the latter uses a global model as a teacher for consistency regularization to prevent forgetting missing class knowledge. Experiments on two publicly-available medical datasets validate the superiority of FedMLP against the state-of-the-art both federated semi-supervised and noisy label learning approaches under task heterogeneity. Code is available at https://github.com/szbonaldo/FedMLP.
In the field of crisis/disaster informatics, social media is increasingly being used for improving situational awareness to inform response and relief efforts. Efficient and accurate text classification tools have been a focal area of investigation in crisis informatics. However, current methods mostly rely on single-label text classification models, which fails to capture different insights embedded in dynamic and multifaceted disaster-related social media data. This study introduces a novel approach to disaster text classification by enhancing a pre-trained Large Language Model (LLM) through instruction fine-tuning targeted for multi-label classification of disaster-related tweets. Our methodology involves creating a comprehensive instruction dataset from disaster-related tweets, which is then used to fine-tune an open-source LLM, thereby embedding it with disaster-specific knowledge. This fine-tuned model can classify multiple aspects of disaster-related information simultaneously, such as the type of event, informativeness, and involvement of human aid, significantly improving the utility of social media data for situational awareness in disasters. The results demonstrate that this approach enhances the categorization of critical information from social media posts, thereby facilitating a more effective deployment for situational awareness during emergencies. This research paves the way for more advanced, adaptable, and robust disaster management tools, leveraging the capabilities of LLMs to improve real-time situational awareness and response strategies in disaster scenarios.
Graph Neural Networks (GNNs) have achieved state-of-the-art results in node classification tasks. However, most improvements are in multi-class classification, with less focus on the cases where each node could have multiple labels. The first challenge in studying multi-label node classification is the scarcity of publicly available datasets. To address this, we collected and released three real-world biological datasets and developed a multi-label graph generator with tunable properties. We also argue that traditional notions of homophily and heterophily do not apply well to multi-label scenarios. Therefore, we define homophily and Cross-Class Neighborhood Similarity for multi-label classification and investigate $9$ collected multi-label datasets. Lastly, we conducted a large-scale comparative study with $8$ methods across nine datasets to evaluate current progress in multi-label node classification. We release our code at \url{https://github.com/Tianqi-py/MLGNC}.
Language Models (LMs) are being proposed for mental health applications where the heightened risk of adverse outcomes means predictive performance may not be a sufficient litmus test of a model's utility in clinical practice. A model that can be trusted for practice should have a correspondence between explanation and clinical determination, yet no prior research has examined the attention fidelity of these models and their effect on ground truth explanations. We introduce an evaluation design that focuses on the robustness and explainability of LMs in identifying Wellness Dimensions (WDs). We focus on two existing mental health and well-being datasets: (a) Multi-label Classification-based MultiWD, and (b) WellXplain for evaluating attention mechanism veracity against expert-labeled explanations. The labels are based on Halbert Dunn's theory of wellness, which gives grounding to our evaluation. We reveal four surprising results about LMs/LLMs: (1) Despite their human-like capabilities, GPT-3.5/4 lag behind RoBERTa, and MedAlpaca, a fine-tuned LLM on WellXplain fails to deliver any remarkable improvements in performance or explanations. (2) Re-examining LMs' predictions based on a confidence-oriented loss function reveals a significant performance drop. (3) Across all LMs/LLMs, the alignment between attention and explanations remains low, with LLMs scoring a dismal 0.0. (4) Most mental health-specific LMs/LLMs overlook domain-specific knowledge and undervalue explanations, causing these discrepancies. This study highlights the need for further research into their consistency and explanations in mental health and well-being.
Interpretability is crucial for machine learning algorithms in high-stakes medical applications. However, high-performing neural networks typically cannot explain their predictions. Post-hoc explanation methods provide a way to understand neural networks but have been shown to suffer from conceptual problems. Moreover, current research largely focuses on providing local explanations for individual samples rather than global explanations for the model itself. In this paper, we propose Attri-Net, an inherently interpretable model for multi-label classification that provides local and global explanations. Attri-Net first counterfactually generates class-specific attribution maps to highlight the disease evidence, then performs classification with logistic regression classifiers based solely on the attribution maps. Local explanations for each prediction can be obtained by interpreting the attribution maps weighted by the classifiers' weights. Global explanation of whole model can be obtained by jointly considering learned average representations of the attribution maps for each class (called the class centers) and the weights of the linear classifiers. To ensure the model is ``right for the right reason", we further introduce a mechanism to guide the model's explanations to align with human knowledge. Our comprehensive evaluations show that Attri-Net can generate high-quality explanations consistent with clinical knowledge while not sacrificing classification performance.
Large language models, notably utilizing Transformer architectures, have emerged as powerful tools due to their scalability and ability to process large amounts of data. Dosovitskiy et al. expanded this architecture to introduce Vision Transformers (ViT), extending its applicability to image processing tasks. Motivated by this advancement, we fine-tuned two variants of ViT models, one pre-trained on ImageNet and another trained from scratch, using the NIH Chest X-ray dataset containing over 100,000 frontal-view X-ray images. Our study evaluates the performance of these models in the multi-label classification of 14 distinct diseases, while using Convolutional Neural Networks (CNNs) and ResNet architectures as baseline models for comparison. Through rigorous assessment based on accuracy metrics, we identify that the pre-trained ViT model surpasses CNNs and ResNet in this multilabel classification task, highlighting its potential for accurate diagnosis of various lung conditions from chest X-ray images.
Predicting genetic mutations from whole slide images is indispensable for cancer diagnosis. However, existing work training multiple binary classification models faces two challenges: (a) Training multiple binary classifiers is inefficient and would inevitably lead to a class imbalance problem. (b) The biological relationships among genes are overlooked, which limits the prediction performance. To tackle these challenges, we innovatively design a Biological-knowledge enhanced PathGenomic multi-label Transformer to improve genetic mutation prediction performances. BPGT first establishes a novel gene encoder that constructs gene priors by two carefully designed modules: (a) A gene graph whose node features are the genes' linguistic descriptions and the cancer phenotype, with edges modeled by genes' pathway associations and mutation consistencies. (b) A knowledge association module that fuses linguistic and biomedical knowledge into gene priors by transformer-based graph representation learning, capturing the intrinsic relationships between different genes' mutations. BPGT then designs a label decoder that finally performs genetic mutation prediction by two tailored modules: (a) A modality fusion module that firstly fuses the gene priors with critical regions in WSIs and obtains gene-wise mutation logits. (b) A comparative multi-label loss that emphasizes the inherent comparisons among mutation status to enhance the discrimination capabilities. Sufficient experiments on The Cancer Genome Atlas benchmark demonstrate that BPGT outperforms the state-of-the-art.
ML-based computer vision models are promising tools for supporting emergency management operations following natural disasters. Arial photographs taken from small manned and unmanned aircraft can be available soon after a disaster and provide valuable information from multiple perspectives for situational awareness and damage assessment applications. However, emergency managers often face challenges finding the most relevant photos among the tens of thousands that may be taken after an incident. While ML-based solutions could enable more effective use of aerial photographs, there is still a lack of training data for imagery of this type from multiple perspectives and for multiple hazard types. To address this, we present the LADI v2 (Low Altitude Disaster Imagery version 2) dataset, a curated set of about 10,000 disaster images captured in the United States by the Civil Air Patrol (CAP) in response to federally-declared emergencies (2015-2023) and annotated for multi-label classification by trained CAP volunteers. We also provide two pretrained baseline classifiers and compare their performance to state-of-the-art vision-language models in multi-label classification. The data and code are released publicly to support the development of computer vision models for emergency management research and applications.
In recent years, continual learning (CL) techniques have made significant progress in learning from streaming data while preserving knowledge across sequential tasks, particularly in the realm of euclidean data. To foster fair evaluation and recognize challenges in CL settings, several evaluation frameworks have been proposed, focusing mainly on the single- and multi-label classification task on euclidean data. However, these evaluation frameworks are not trivially applicable when the input data is graph-structured, as they do not consider the topological structure inherent in graphs. Existing continual graph learning (CGL) evaluation frameworks have predominantly focussed on single-label scenarios in the node classification (NC) task. This focus has overlooked the complexities of multi-label scenarios, where nodes may exhibit affiliations with multiple labels, simultaneously participating in multiple tasks. We develop a graph-aware evaluation (\agale) framework that accommodates both single-labeled and multi-labeled nodes, addressing the limitations of previous evaluation frameworks. In particular, we define new incremental settings and devise data partitioning algorithms tailored to CGL datasets. We perform extensive experiments comparing methods from the domains of continual learning, continual graph learning, and dynamic graph learning (DGL). We theoretically analyze \agale and provide new insights about the role of homophily in the performance of compared methods. We release our framework at https://github.com/Tianqi-py/AGALE.
In this paper, we address the challenges of automatic metadata annotation in the domain of Galleries, Libraries, Archives, and Museums (GLAMs) by introducing a novel dataset, EUFCC340K, collected from the Europeana portal. Comprising over 340,000 images, the EUFCC340K dataset is organized across multiple facets: Materials, Object Types, Disciplines, and Subjects, following a hierarchical structure based on the Art & Architecture Thesaurus (AAT). We developed several baseline models, incorporating multiple heads on a ConvNeXT backbone for multi-label image tagging on these facets, and fine-tuning a CLIP model with our image text pairs. Our experiments to evaluate model robustness and generalization capabilities in two different test scenarios demonstrate the utility of the dataset in improving multi-label classification tools that have the potential to alleviate cataloging tasks in the cultural heritage sector.
Multimodal sensing has proven valuable for visual tracking, as different sensor types offer unique strengths in handling one specific challenging scene where object appearance varies. While a generalist model capable of leveraging all modalities would be ideal, development is hindered by data sparsity, typically in practice, only one modality is available at a time. Therefore, it is crucial to ensure and achieve that knowledge gained from multimodal sensing -- such as identifying relevant features and regions -- is effectively shared, even when certain modalities are unavailable at inference. We venture with a simple assumption: similar samples across different modalities have more knowledge to share than otherwise. To implement this, we employ a ``weak" classifier tasked with distinguishing between modalities. More specifically, if the classifier ``fails" to accurately identify the modality of the given sample, this signals an opportunity for cross-modal knowledge sharing. Intuitively, knowledge transfer is facilitated whenever a sample from one modality is sufficiently close and aligned with another. Technically, we achieve this by routing samples from one modality to the expert of the others, within a mixture-of-experts framework designed for multimodal video object tracking. During the inference, the expert of the respective modality is chosen, which we show to benefit from the multimodal knowledge available during training, thanks to the proposed method. Through the exhaustive experiments that use only paired RGB-E, RGB-D, and RGB-T during training, we showcase the benefit of the proposed method for RGB-X tracker during inference, with an average +3\% precision improvement over the current SOTA. Our source code is publicly available at https://github.com/supertyd/XTrack/tree/main.
Large Language Models (LLMs) have garnered considerable attention owing to their remarkable capabilities, leading to an increasing number of companies offering LLMs as services. Different LLMs achieve different performance at different costs. A challenge for users lies in choosing the LLMs that best fit their needs, balancing cost and performance. In this paper, we propose a framework for addressing the cost-effective query allocation problem for LLMs. Given a set of input queries and candidate LLMs, our framework, named OptLLM, provides users with a range of optimal solutions to choose from, aligning with their budget constraints and performance preferences, including options for maximizing accuracy and minimizing cost. OptLLM predicts the performance of candidate LLMs on each query using a multi-label classification model with uncertainty estimation and then iteratively generates a set of non-dominated solutions by destructing and reconstructing the current solution. To evaluate the effectiveness of OptLLM, we conduct extensive experiments on various types of tasks, including text classification, question answering, sentiment analysis, reasoning, and log parsing. Our experimental results demonstrate that OptLLM substantially reduces costs by 2.40% to 49.18% while achieving the same accuracy as the best LLM. Compared to other multi-objective optimization algorithms, OptLLM improves accuracy by 2.94% to 69.05% at the same cost or saves costs by 8.79% and 95.87% while maintaining the highest attainable accuracy.
The Vision-Language Foundation model is increasingly investigated in the fields of computer vision and natural language processing, yet its exploration in ophthalmology and broader medical applications remains limited. The challenge is the lack of labeled data for the training of foundation model. To handle this issue, a CLIP-style retinal image foundation model is developed in this paper. Our foundation model, RET-CLIP, is specifically trained on a dataset of 193,865 patients to extract general features of color fundus photographs (CFPs), employing a tripartite optimization strategy to focus on left eye, right eye, and patient level to reflect real-world clinical scenarios. Extensive experiments demonstrate that RET-CLIP outperforms existing benchmarks across eight diverse datasets spanning four critical diagnostic categories: diabetic retinopathy, glaucoma, multiple disease diagnosis, and multi-label classification of multiple diseases, which demonstrate the performance and generality of our foundation model. The sourse code and pre-trained model are available at https://github.com/sStonemason/RET-CLIP.
Text classification is fundamental in Natural Language Processing (NLP), and the advent of Large Language Models (LLMs) has revolutionized the field. This paper introduces an adaptable and reliable text classification paradigm, which leverages LLMs as the core component to address text classification tasks. Our system simplifies the traditional text classification workflows, reducing the need for extensive preprocessing and domain-specific expertise to deliver adaptable and reliable text classification results. We evaluated the performance of several LLMs, machine learning algorithms, and neural network-based architectures on four diverse datasets. Results demonstrate that certain LLMs surpass traditional methods in sentiment analysis, spam SMS detection, and multi-label classification. Furthermore, it is shown that the system's performance can be further enhanced through few-shot or fine-tuning strategies, making the fine-tuned model the top performer across all datasets. Source code and datasets are available in this GitHub repository: https://github.com/yeyimilk/llm-zero-shot-classifiers.
The task of medical image recognition is notably complicated by the presence of varied and multiple pathological indications, presenting a unique challenge in multi-label classification with unseen labels. This complexity underlines the need for computer-aided diagnosis methods employing multi-label zero-shot learning. Recent advancements in pre-trained vision-language models (VLMs) have showcased notable zero-shot classification abilities on medical images. However, these methods have limitations on leveraging extensive pre-trained knowledge from broader image datasets, and often depend on manual prompt construction by expert radiologists. By automating the process of prompt tuning, prompt learning techniques have emerged as an efficient way to adapt VLMs to downstream tasks. Yet, existing CoOp-based strategies fall short in performing class-specific prompts on unseen categories, limiting generalizability in fine-grained scenarios. To overcome these constraints, we introduce a novel prompt generation approach inspirited by text generation in natural language processing (NLP). Our method, named Pseudo-Prompt Generating (PsPG), capitalizes on the priori knowledge of multi-modal features. Featuring a RNN-based decoder, PsPG autoregressively generates class-tailored embedding vectors, i.e., pseudo-prompts. Comparative evaluations on various multi-label chest radiograph datasets affirm the superiority of our approach against leading medical vision-language and multi-label prompt learning methods. The source code is available at https://github.com/fallingnight/PsPG