Knowledge graph embedding models (KGEMs) are used for various tasks related to knowledge graphs (KGs), including link prediction. They are trained with loss functions that consider batches of true and false triples. However, different kinds of false triples exist and recent works suggest that they should not be valued equally, leading to specific negative sampling procedures. In line with this recent assumption, we posit that negative triples that are semantically valid w.r.t. signatures of relations (domain and range) are high-quality negatives. Hence, we enrich the three main loss functions for link prediction such that all kinds of negatives are sampled but treated differently based on their semantic validity. In an extensive and controlled experimental setting, we show that the proposed loss functions systematically provide satisfying results which demonstrates both the generality and superiority of our proposed approach. In fact, the proposed loss functions (1) lead to better MRR and Hits@10 values, and (2) drive KGEMs towards better semantic correctness as measured by the Sem@K metric. This highlights that relation signatures globally improve KGEMs, and thus should be incorporated into loss functions. Domains and ranges of relations being largely available in schema-defined KGs, this makes our approach both beneficial and widely usable in practice.
With the widespread use of knowledge graphs (KG) in various automated AI systems and applications, it is very important to ensure that information retrieval algorithms leveraging them are free from societal biases. Previous works have depicted biases that persist in KGs, as well as employed several metrics for measuring the biases. However, such studies lack the systematic exploration of the sensitivity of the bias measurements, through varying sources of data, or the embedding algorithms used. To address this research gap, in this work, we present a holistic analysis of bias measurement on the knowledge graph. First, we attempt to reveal data biases that surface in Wikidata for thirteen different demographics selected from seven continents. Next, we attempt to unfold the variance in the detection of biases by two different knowledge graph embedding algorithms - TransE and ComplEx. We conduct our extensive experiments on a large number of occupations sampled from the thirteen demographics with respect to the sensitive attribute, i.e., gender. Our results show that the inherent data bias that persists in KG can be altered by specific algorithm bias as incorporated by KG embedding learning algorithms. Further, we show that the choice of the state-of-the-art KG embedding algorithm has a strong impact on the ranking of biased occupations irrespective of gender. We observe that the similarity of the biased occupations across demographics is minimal which reflects the socio-cultural differences around the globe. We believe that this full-scale audit of the bias measurement pipeline will raise awareness among the community while deriving insights related to design choices of data and algorithms both and refrain from the popular dogma of ``one-size-fits-all''.
The growing popularity of neuro symbolic reasoning has led to the adoption of various forms of differentiable (i.e., fuzzy) first order logic. We introduce PyReason, a software framework based on generalized annotated logic that both captures the current cohort of differentiable logics and temporal extensions to support inference over finite periods of time with capabilities for open world reasoning. Further, PyReason is implemented to directly support reasoning over graphical structures (e.g., knowledge graphs, social networks, biological networks, etc.), produces fully explainable traces of inference, and includes various practical features such as type checking and a memory-efficient implementation. This paper reviews various extensions of generalized annotated logic integrated into our implementation, our modern, efficient Python-based implementation that conducts exact yet scalable deductive inference, and a suite of experiments. PyReason is available at: github.com/lab-v2/pyreason.
Complex Query Answering (CQA) is an important and fundamental task for knowledge graph (KG) reasoning. Query encoding (QE) is proposed as a fast and robust solution to CQA. In the encoding process, most existing QE methods first parse the logical query into an executable computational direct-acyclic graph (DAG), then use neural networks to parameterize the operators, and finally, recursively execute these neuralized operators. However, the parameterization-and-execution paradigm may be potentially over-complicated, as it can be structurally simplified by a single neural network encoder. Meanwhile, sequence encoders, like LSTM and Transformer, proved to be effective for encoding semantic graphs in related tasks. Motivated by this, we propose sequential query encoding (SQE) as an alternative to encode queries for CQA. Instead of parameterizing and executing the computational graph, SQE first uses a search-based algorithm to linearize the computational graph to a sequence of tokens and then uses a sequence encoder to compute its vector representation. Then this vector representation is used as a query embedding to retrieve answers from the embedding space according to similarity scores. Despite its simplicity, SQE demonstrates state-of-the-art neural query encoding performance on FB15k, FB15k-237, and NELL on an extended benchmark including twenty-nine types of in-distribution queries. Further experiment shows that SQE also demonstrates comparable knowledge inference capability on out-of-distribution queries, whose query types are not observed during the training process.
Knowledge-aware question answering (KAQA) requires the model to answer questions over a knowledge base, which is essential for both open-domain QA and domain-specific QA, especially when language models alone cannot provide all the knowledge needed. Despite the promising result of recent KAQA systems which tend to integrate linguistic knowledge from pre-trained language models (PLM) and factual knowledge from knowledge graphs (KG) to answer complex questions, a bottleneck exists in effectively fusing the representations from PLMs and KGs because of (i) the semantic and distributional gaps between them, and (ii) the difficulties in joint reasoning over the provided knowledge from both modalities. To address the above two problems, we propose a Fine-grained Two-stage training framework (FiTs) to boost the KAQA system performance: The first stage aims at aligning representations from the PLM and the KG, thus bridging the modality gaps between them, named knowledge adaptive post-training. The second stage, called knowledge-aware fine-tuning, aims to improve the model's joint reasoning ability based on the aligned representations. In detail, we fine-tune the post-trained model via two auxiliary self-supervised tasks in addition to the QA supervision. Extensive experiments demonstrate that our approach achieves state-of-the-art performance on three benchmarks in the commonsense reasoning (i.e., CommonsenseQA, OpenbookQA) and medical question answering (i.e., MedQA-USMILE) domains.
The political stance prediction for news articles has been widely studied to mitigate the echo chamber effect -- people fall into their thoughts and reinforce their pre-existing beliefs. The previous works for the political stance problem focus on (1) identifying political factors that could reflect the political stance of a news article and (2) capturing those factors effectively. Despite their empirical successes, they are not sufficiently justified in terms of how effective their identified factors are in the political stance prediction. Motivated by this, in this work, we conduct a user study to investigate important factors in political stance prediction, and observe that the context and tone of a news article (implicit) and external knowledge for real-world entities appearing in the article (explicit) are important in determining its political stance. Based on this observation, we propose a novel knowledge-aware approach to political stance prediction (KHAN), employing (1) hierarchical attention networks (HAN) to learn the relationships among words and sentences in three different levels and (2) knowledge encoding (KE) to incorporate external knowledge for real-world entities into the process of political stance prediction. Also, to take into account the subtle and important difference between opposite political stances, we build two independent political knowledge graphs (KG) (i.e., KG-lib and KG-con) by ourselves and learn to fuse the different political knowledge. Through extensive evaluations on three real-world datasets, we demonstrate the superiority of DASH in terms of (1) accuracy, (2) efficiency, and (3) effectiveness.
Graph Neural Networks (GNNs) provide powerful representations for recommendation tasks. GNN-based recommendation systems capture the complex high-order connectivity between users and items by aggregating information from distant neighbors and can improve the performance of recommender systems. Recently, Knowledge Graphs (KGs) have also been incorporated into the user-item interaction graph to provide more abundant contextual information; they are exploited to address cold-start problems and enable more explainable aggregation in GNN-based recommender systems (GNN-Rs). However, due to the heterogeneous nature of users and items, developing an effective aggregation strategy that works across multiple GNN-Rs, such as LightGCN and KGAT, remains a challenge. In this paper, we propose a novel reinforcement learning-based message passing framework for recommender systems, which we call DPAO (Dual Policy framework for Aggregation Optimization). This framework adaptively determines high-order connectivity to aggregate users and items using dual policy learning. Dual policy learning leverages two Deep-Q-Network models to exploit the user- and item-aware feedback from a GNN-R and boost the performance of the target GNN-R. Our proposed framework was evaluated with both non-KG-based and KG-based GNN-R models on six real-world datasets, and their results show that our proposed framework significantly enhances the recent base model, improving nDCG and Recall by up to 63.7% and 42.9%, respectively. Our implementation code is available at https://github.com/steve30572/DPAO/.
Geographic data plays an essential role in various Web, Semantic Web and machine learning applications. OpenStreetMap and knowledge graphs are critical complementary sources of geographic data on the Web. However, data veracity, the lack of integration of geographic and semantic characteristics, and incomplete representations substantially limit the data utility. Verification, enrichment and semantic representation are essential for making geographic data accessible for the Semantic Web and machine learning. This article describes recent approaches we developed to tackle these challenges.
Often, deep network models are purely inductive during training and while performing inference on unseen data. Thus, when such models are used for predictions, it is well known that they often fail to capture the semantic information and implicit dependencies that exist among objects (or concepts) on a population level. Moreover, it is still unclear how domain or prior modal knowledge can be specified in a backpropagation friendly manner, especially in large-scale and noisy settings. In this work, we propose an end-to-end vision and language model incorporating explicit knowledge graphs. We also introduce an interactive out-of-distribution (OOD) layer using implicit network operator. The layer is used to filter noise that is brought by external knowledge base. In practice, we apply our model on several vision and language downstream tasks including visual question answering, visual reasoning, and image-text retrieval on different datasets. Our experiments show that it is possible to design models that perform similarly to state-of-art results but with significantly fewer samples and training time.
A fundamental task for knowledge graphs (KGs) is knowledge graph completion (KGC). It aims to predict unseen edges by learning representations for all the entities and relations in a KG. A common concern when learning representations on traditional graphs is degree bias. It can affect graph algorithms by learning poor representations for lower-degree nodes, often leading to low performance on such nodes. However, there has been limited research on whether there exists degree bias for embedding-based KGC and how such bias affects the performance of KGC. In this paper, we validate the existence of degree bias in embedding-based KGC and identify the key factor to degree bias. We then introduce a novel data augmentation method, KG-Mixup, to generate synthetic triples to mitigate such bias. Extensive experiments have demonstrated that our method can improve various embedding-based KGC methods and outperform other methods tackling the bias problem on multiple benchmark datasets.
Massive knowledge graphs like Wikidata attempt to capture world knowledge about multiple entities. Recent approaches concentrate on automatically enriching these KGs from text. However a lot of information present in the form of natural text in low resource languages is often missed out. Cross Lingual Information Extraction aims at extracting factual information in the form of English triples from low resource Indian Language text. Despite its massive potential, progress made on this task is lagging when compared to Monolingual Information Extraction. In this paper, we propose the task of Cross Lingual Fact Extraction(CLFE) from text and devise an end-to-end generative approach for the same which achieves an overall F1 score of 77.46.
Knowledge graphs represent known facts using triplets. While existing knowledge graph embedding methods only consider the connections between entities, we propose considering the relationships between triplets. For example, let us consider two triplets $T_1$ and $T_2$ where $T_1$ is (Academy_Awards, Nominates, Avatar) and $T_2$ is (Avatar, Wins, Academy_Awards). Given these two base-level triplets, we see that $T_1$ is a prerequisite for $T_2$. In this paper, we define a higher-level triplet to represent a relationship between triplets, e.g., $\langle T_1$, PrerequisiteFor, $T_2\rangle$ where PrerequisiteFor is a higher-level relation. We define a bi-level knowledge graph that consists of the base-level and the higher-level triplets. We also propose a data augmentation strategy based on the random walks on the bi-level knowledge graph to augment plausible triplets. Our model called BiVE learns embeddings by taking into account the structures of the base-level and the higher-level triplets, with additional consideration of the augmented triplets. We propose two new tasks: triplet prediction and conditional link prediction. Given a triplet $T_1$ and a higher-level relation, the triplet prediction predicts a triplet that is likely to be connected to $T_1$ by the higher-level relation, e.g., $\langle T_1$, PrerequisiteFor, ?$\rangle$. The conditional link prediction predicts a missing entity in a triplet conditioned on another triplet, e.g., $\langle T_1$, PrerequisiteFor, (Avatar, Wins, ?)$\rangle$. Experimental results show that BiVE significantly outperforms all other methods in the two new tasks and the typical base-level link prediction in real-world bi-level knowledge graphs.
We propose an entity-agnostic representation learning method for handling the problem of inefficient parameter storage costs brought by embedding knowledge graphs. Conventional knowledge graph embedding methods map elements in a knowledge graph, including entities and relations, into continuous vector spaces by assigning them one or multiple specific embeddings (i.e., vector representations). Thus the number of embedding parameters increases linearly as the growth of knowledge graphs. In our proposed model, Entity-Agnostic Representation Learning (EARL), we only learn the embeddings for a small set of entities and refer to them as reserved entities. To obtain the embeddings for the full set of entities, we encode their distinguishable information from their connected relations, k-nearest reserved entities, and multi-hop neighbors. We learn universal and entity-agnostic encoders for transforming distinguishable information into entity embeddings. This approach allows our proposed EARL to have a static, efficient, and lower parameter count than conventional knowledge graph embedding methods. Experimental results show that EARL uses fewer parameters and performs better on link prediction tasks than baselines, reflecting its parameter efficiency.
Entity alignment (EA) is a fundamental data integration task that identifies equivalent entities between different knowledge graphs (KGs). Temporal Knowledge graphs (TKGs) extend traditional knowledge graphs by introducing timestamps, which have received increasing attention. State-of-the-art time-aware EA studies have suggested that the temporal information of TKGs facilitates the performance of EA. However, existing studies have not thoroughly exploited the advantages of temporal information in TKGs. Also, they perform EA by pre-aligning entity pairs, which can be labor-intensive and thus inefficient. In this paper, we present DualMatch which effectively fuses the relational and temporal information for EA. DualMatch transfers EA on TKGs into a weighted graph matching problem. More specifically, DualMatch is equipped with an unsupervised method, which achieves EA without necessitating seed alignment. DualMatch has two steps: (i) encoding temporal and relational information into embeddings separately using a novel label-free encoder, Dual-Encoder; and (ii) fusing both information and transforming it into alignment using a novel graph-matching-based decoder, GM-Decoder. DualMatch is able to perform EA on TKGs with or without supervision, due to its capability of effectively capturing temporal information. Extensive experiments on three real-world TKG datasets offer the insight that DualMatch outperforms the state-of-the-art methods in terms of H@1 by 2.4% - 10.7% and MRR by 1.7% - 7.6%, respectively.
The task of fully inductive link prediction in knowledge graphs has gained significant attention, with various graph neural networks being proposed to address it. This task presents greater challenges than traditional inductive link prediction tasks with only new nodes, as models must be capable of zero-shot generalization to both unseen nodes and unseen relation types in the inference graph. Despite the development of novel models, a unifying theoretical understanding of their success remains elusive, and the limitations of these methods are not well-studied. In this work, we introduce the concept of double permutation-equivariant representations and demonstrate its necessity for effective performance in this task. We show that many existing models, despite their diverse architectural designs, conform to this framework. However, we also identify inherent limitations in double permutation-equivariant representations, which restrict these models's ability to learn effectively on datasets with varying characteristics. Our findings suggest that while double equivariance is necessary for meta-learning across knowledge graphs from different domains, it is not sufficient. There remains a fundamental gap between double permutation-equivariant models and the concept of foundation models designed to learn patterns across all domains.
In this paper, we are interested in developing semantic parsers which understand natural language questions embedded in a conversation with a user and ground them to formal queries over definitions in a general purpose knowledge graph (KG) with very large vocabularies (covering thousands of concept names and relations, and millions of entities). To this end, we develop a dataset where user questions are annotated with Sparql parses and system answers correspond to execution results thereof. We present two different semantic parsing approaches and highlight the challenges of the task: dealing with large vocabularies, modelling conversation context, predicting queries with multiple entities, and generalising to new questions at test time. We hope our dataset will serve as useful testbed for the development of conversational semantic parsers. Our dataset and models are released at https://github.com/EdinburghNLP/SPICE.
OWL ontologies, whose formal semantics are rooted in Description Logic (DL), have been widely used for knowledge representation. Similar to Knowledge Graphs (KGs), ontologies are often incomplete, and maintaining and constructing them has proved challenging. While classical deductive reasoning algorithms use the precise formal semantics of an ontology to predict missing facts, recent years have witnessed growing interest in inductive reasoning techniques that can derive probable facts from an ontology. Similar to KGs, a promising approach is to learn ontology embeddings in a latent vector space, while additionally ensuring they adhere to the semantics of the underlying DL. While a variety of approaches have been proposed, current ontology embedding methods suffer from several shortcomings, especially that they all fail to faithfully model one-to-many, many-to-one, and many-to-many relations and role inclusion axioms. To address this problem and improve ontology completion performance, we propose a novel ontology embedding method named Box$^2$EL for the DL EL++, which represents both concepts and roles as boxes (i.e., axis-aligned hyperrectangles), and models inter-concept relationships using a bumping mechanism. We theoretically prove the soundness of Box$^2$EL and conduct an extensive experimental evaluation, achieving state-of-the-art results across a variety of datasets on the tasks of subsumption prediction, role assertion prediction, and approximating deductive reasoning.
Complex Query Answering (CQA) over Knowledge Graphs (KGs) has attracted a lot of attention to potentially support many applications. Given that KGs are usually incomplete, neural models are proposed to answer the logical queries by parameterizing set operators with complex neural networks. However, such methods usually train neural set operators with a large number of entity and relation embeddings from the zero, where whether and how the embeddings or the neural set operators contribute to the performance remains not clear. In this paper, we propose a simple framework for complex query answering that decomposes the KG embeddings from neural set operators. We propose to represent the complex queries into the query graph. On top of the query graph, we propose the Logical Message Passing Neural Network (LMPNN) that connects the local one-hop inferences on atomic formulas to the global logical reasoning for complex query answering. We leverage existing effective KG embeddings to conduct one-hop inferences on atomic formulas, the results of which are regarded as the messages passed in LMPNN. The reasoning process over the overall logical formulas is turned into the forward pass of LMPNN that incrementally aggregates local information to finally predict the answers' embeddings. The complex logical inference across different types of queries will then be learned from training examples based on the LMPNN architecture. Theoretically, our query-graph represenation is more general than the prevailing operator-tree formulation, so our approach applies to a broader range of complex KG queries. Empirically, our approach yields the new state-of-the-art neural CQA model. Our research bridges the gap between complex KG query answering tasks and the long-standing achievements of knowledge graph representation learning.
Temporal graph neural network has recently received significant attention due to its wide application scenarios, such as bioinformatics, knowledge graphs, and social networks. There are some temporal graph neural networks that achieve remarkable results. However, these works focus on future event prediction and are performed under the assumption that all historical events are observable. In real-world applications, events are not always observable, and estimating event time is as important as predicting future events. In this paper, we propose MTGN, a missing event-aware temporal graph neural network, which uniformly models evolving graph structure and timing of events to support predicting what will happen in the future and when it will happen.MTGN models the dynamic of both observed and missing events as two coupled temporal point processes, thereby incorporating the effects of missing events into the network. Experimental results on several real-world temporal graphs demonstrate that MTGN significantly outperforms existing methods with up to 89% and 112% more accurate time and link prediction. Code can be found on https://github.com/HIT-ICES/TNNLS-MTGN.
This paper describes a novel Python package, named causalgraph, for modeling and saving causal graphs embedded in knowledge graphs. The package has been designed to provide an interface between causal disciplines such as causal discovery and causal inference. With this package, users can create and save causal graphs and export the generated graphs for use in other graph-based packages. The main advantage of the proposed package is its ability to facilitate the linking of additional information and metadata to causal structures. In addition, the package offers a variety of functions for graph modeling and plotting, such as editing, adding, and deleting nodes and edges. It is also compatible with widely used graph data science libraries such as NetworkX and Tigramite and incorporates a specially developed causalgraph ontology in the background. This paper provides an overview of the package's main features, functionality, and usage examples, enabling the reader to use the package effectively in practice.