We study the problem of learning from aggregate observations where supervision signals are given to sets of instances instead of individual instances, while the goal is still to predict labels of unseen individuals. A well-known example is multiple instance learning (MIL). In this paper, we extend MIL beyond binary classification to other problems such as multiclass classification and regression. We present a general probabilistic framework that accommodates a variety of aggregate observations, e.g., pairwise similarity/triplet comparison for classification and mean/difference/rank observation for regression. Simple maximum likelihood solutions can be applied to various differentiable models such as deep neural networks and gradient boosting machines. Moreover, we develop the concept of consistency up to an equivalence relation to characterize our estimator and show that it has nice convergence properties under mild assumptions. Experiments on three problem settings -- classification via triplet comparison and regression via mean/rank observation indicate the effectiveness of the proposed method.
This paper focuses on how to extract opinions over each Persian sentence-level text. Deep learning models provided a new way to boost the quality of the output. However, these architectures need to feed on big annotated data as well as an accurate design. To best of our knowledge, we do not merely suffer from lack of well-annotated Persian sentiment corpus, but also a novel model to classify the Persian opinions in terms of both multiple and binary classification. So in this work, first we propose two novel deep learning architectures comprises of bidirectional LSTM and CNN. They are a part of a deep hierarchy designed precisely and also able to classify sentences in both cases. Second, we suggested three data augmentation techniques for the low-resources Persian sentiment corpus. Our comprehensive experiments on three baselines and two different neural word embedding methods show that our data augmentation methods and intended models successfully address the aims of the research.
Machine learning-based multi-label medical text classifications can be used to enhance the understanding of the human body and aid the need for patient care. We present a broad study on clinical natural language processing techniques to maximise a feature representing text when predicting medical codes on patients with multi-morbidity. We present results of multi-label medical text classification problems with 18, 50 and 155 labels. We compare several variations to embeddings, text tagging, and pre-processing. For imbalanced data we show that labels which occur infrequently, benefit the most from additional features incorporated in embeddings. We also show that high dimensional embeddings pre-trained using health-related data present a significant improvement in a multi-label setting, similarly to the way they improve performance for binary classification. High dimensional embeddings from this research are made available for public use.
Applications based on Machine Learning models have now become an indispensable part of the everyday life and the professional world. A critical question then recently arised among the population: Do algorithmic decisions convey any type of discrimination against specific groups of population or minorities? In this paper, we show the importance of understanding how a bias can be introduced into automatic decisions. We first present a mathematical framework for the fair learning problem, specifically in the binary classification setting. We then propose to quantify the presence of bias by using the standard Disparate Impact index on the real and well-known Adult income data set. Finally, we check the performance of different approaches aiming to reduce the bias in binary classification outcomes. Importantly, we show that some intuitive methods are ineffective. This sheds light on the fact trying to make fair machine learning models may be a particularly challenging task, in particular when the training observations contain a bias.
In this work we cast the problem of binary classification in terms of estimating a partition on Bernoulli data. When the explanatory variables are all categorical, the problem can be modelled using the language of boolean functions. We offer a probabilistic analysis of the problem, and propose two algorithms for learning boolean functions from binary data.
In this work we present BrazilDAM, a novel public dataset based on Sentinel-2 and Landsat-8 satellite images covering all tailings dams cataloged by the Brazilian National Mining Agency (ANM). The dataset was built using georeferenced images from 769 dams, recorded between 2016 and 2019. The time series were processed in order to produce cloud free images. The dams contain mining waste from different ore categories and have highly varying shapes, areas and volumes, making BrazilDAM particularly interesting and challenging to be used in machine learning benchmarks. The original catalog contains, besides the dam coordinates, information about: the main ore, constructive method, risk category, and associated potential damage. To evaluate BrazilDAM's predictive potential we performed classification essays using state-of-the-art deep Convolutional Neural Network (CNNs). In the experiments, we achieved an average classification accuracy of 94.11% in tailing dam binary classification task. In addition, others four setups of experiments were made using the complementary information from the original catalog, exhaustively exploiting the capacity of the proposed dataset.
Deep convolutional neural networks (CNNs) trained with logistic and softmax losses have made significant advancement in visual recognition tasks in computer vision. When training data exhibit class imbalances, the class-wise reweighted version of logistic and softmax losses are often used to boost performance of the unweighted version. In this paper, motivated to explain the reweighting mechanism, we explicate the learning property of those two loss functions by analyzing the necessary condition (e.g., gradient equals to zero) after training CNNs to converge to a local minimum. The analysis immediately provides us explanations for understanding (1) quantitative effects of the class-wise reweighting mechanism: deterministic effectiveness for binary classification using logistic loss yet indeterministic for multi-class classification using softmax loss; (2) disadvantage of logistic loss for single-label multi-class classification via one-vs.-all approach, which is due to the averaging effect on predicted probabilities for the negative class (e.g., non-target classes) in the learning process. With the disadvantage and advantage of logistic loss disentangled, we thereafter propose a novel reweighted logistic loss for multi-class classification. Our simple yet effective formulation improves ordinary logistic loss by focusing on learning hard non-target classes (target vs. non-target class in one-vs.-all) and turned out to be competitive with softmax loss. We evaluate our method on several benchmark datasets to demonstrate its effectiveness.
Dilation and erosion are two elementary operations from mathematical morphology, a non-linear lattice computing methodology widely used for image processing and analysis. The dilation-erosion perceptron (DEP) is a morphological neural network obtained by a convex combination of a dilation and an erosion followed by the application of a hard-limiter function for binary classification tasks. A DEP classifier can be trained using a convex-concave procedure along with the minimization of the hinge loss function. As a lattice computing model, the DEP classifier assumes the feature and class spaces are partially ordered sets. In many practical situations, however, there is no natural ordering for the feature patterns. Using concepts from multi-valued mathematical morphology, this paper introduces the reduced dilation-erosion (r-DEP) classifier. An r-DEP classifier is obtained by endowing the feature space with an appropriate reduced ordering. Such reduced ordering can be determined using two approaches: One based on an ensemble of support vector classifiers (SVCs) with different kernels and the other based on a bagging of similar SVCs trained using different samples of the training set. Using several binary classification datasets from the OpenML repository, the ensemble and bagging r-DEP classifiers yielded in mean higher balanced accuracy scores than the linear, polynomial, and radial basis function (RBF) SVCs as well as their ensemble and a bagging of RBF SVCs.
In this study we focus on the prediction of basketball games in the Euroleague competition using machine learning modelling. The prediction is a binary classification problem, predicting whether a match finishes 1 (home win) or 2 (away win). Data is collected from the Euroleague's official website for the seasons 2016-2017, 2017-2018 and 2018-2019, i.e. in the new format era. Features are extracted from matches' data and off-the-shelf supervised machine learning techniques are applied. We calibrate and validate our models. We find that simple machine learning models give accuracy not greater than 67% on the test set, worse than some sophisticated benchmark models. Additionally, the importance of this study lies in the "wisdom of the basketball crowd" and we demonstrate how the predicting power of a collective group of basketball enthusiasts can outperform machine learning models discussed in this study. We argue why the accuracy level of this group of "experts" should be set as the benchmark for future studies in the prediction of (European) basketball games using machine learning.
Speech enhancement tasks have seen significant improvements with the advance of deep learning technology, but with the cost of increased computational complexity. In this study, we propose an adaptive boosting approach to learning locality sensitive hash codes, which represent audio spectra efficiently. We use the learned hash codes for single-channel speech denoising tasks as an alternative to a complex machine learning model, particularly to address the resource-constrained environments. Our adaptive boosting algorithm learns simple logistic regressors as the weak learners. Once trained, their binary classification results transform each spectrum of test noisy speech into a bit string. Simple bitwise operations calculate Hamming distance to find the K-nearest matching frames in the dictionary of training noisy speech spectra, whose associated ideal binary masks are averaged to estimate the denoising mask for that test mixture. Our proposed learning algorithm differs from AdaBoost in the sense that the projections are trained to minimize the distances between the self-similarity matrix of the hash codes and that of the original spectra, rather than the misclassification rate. We evaluate our discriminative hash codes on the TIMIT corpus with various noise types, and show comparative performance to deep learning methods in terms of denoising performance and complexity.
Recent work on policy learning from observational data has highlighted the importance of efficient policy evaluation and has proposed reductions to weighted (cost-sensitive) classification. But, efficient policy evaluation need not yield efficient estimation of policy parameters. We consider the estimation problem given by a weighted surrogate-loss classification reduction of policy learning with any score function, either direct, inverse-propensity weighted, or doubly robust. We show that, under a correct specification assumption, the weighted classification formulation need not be efficient for policy parameters. We draw a contrast to actual (possibly weighted) binary classification, where correct specification implies a parametric model, while for policy learning it only implies a semiparametric model. In light of this, we instead propose an estimation approach based on generalized method of moments, which is efficient for the policy parameters. We propose a particular method based on recent developments on solving moment problems using neural networks and demonstrate the efficiency and regret benefits of this method empirically.
The 01 loss is robust to outliers and tolerant to noisy data compared to convex loss functions. We conjecture that the 01 loss may also be more robust to adversarial attacks. To study this empirically we have developed a stochastic coordinate descent algorithm for a linear 01 loss classifier and a single hidden layer 01 loss neural network. Due to the absence of the gradient we iteratively update coordinates on random subsets of the data for fixed epochs. We show our algorithms to be fast and comparable in accuracy to the linear support vector machine and logistic loss single hidden layer network for binary classification on several image benchmarks, thus establishing that our method is on-par in test accuracy with convex losses. We then subject them to accurately trained substitute model black box attacks on the same image benchmarks and find them to be more robust than convex counterparts. On CIFAR10 binary classification task between classes 0 and 1 with adversarial perturbation of 0.0625 we see that the MLP01 network loses 27\% in accuracy whereas the MLP-logistic counterpart loses 83\%. Similarly on STL10 and ImageNet binary classification between classes 0 and 1 the MLP01 network loses 21\% and 20\% while MLP-logistic loses 67\% and 45\% respectively. On MNIST that is a well-separable dataset we find MLP01 comparable to MLP-logistic and show under simulation how and why our 01 loss solver is less robust there. We then propose adversarial training for our linear 01 loss solver that significantly improves its robustness on MNIST and all other datasets and retains clean test accuracy. Finally we show practical applications of our method to deter traffic sign and facial recognition adversarial attacks. We discuss attacks with 01 loss, substitute model accuracy, and several future avenues like multiclass, 01 loss convolutions, and further adversarial training.
stream-learn is a Python package compatible with scikit-learn and developed for the drifting and imbalanced data stream analysis. Its main component is a stream generator, which allows to produce a synthetic data stream that may incorporate each of the three main concept drift types (i.e. sudden, gradual and incremental drift) in their recurring or non-recurring versions. The package allows conducting experiments following established evaluation methodologies (i.e. Test-Then-Train and Prequential). In addition, estimators adapted for data stream classification have been implemented, including both simple classifiers and state-of-art chunk-based and online classifier ensembles. To improve computational efficiency, package utilises its own implementations of prediction metrics for imbalanced binary classification tasks.
Fungal Biosynthetic Gene Clusters (BGCs) of secondary metabolites are clusters of genes capable of producing natural products, compounds that play an important role in the production of a wide variety of bioactive compounds, including antibiotics and pharmaceuticals. Identifying BGCs can lead to the discovery of novel natural products to benefit human health. Previous work has been focused on developing automatic tools to support BGC discovery in plants, fungi, and bacteria. Data-driven methods, as well as probabilistic and supervised learning methods have been explored in identifying BGCs. Most methods applied to identify fungal BGCs were data-driven and presented limited scope. Supervised learning methods have been shown to perform well at identifying BGCs in bacteria, and could be well suited to perform the same task in fungi. But labeled data instances are needed to perform supervised learning. Openly accessible BGC databases contain only a very small portion of previously curated fungal BGCs. Making new fungal BGC datasets available could motivate the development of supervised learning methods for fungal BGCs and potentially improve prediction performance compared to data-driven methods. In this work we propose new publicly available fungal BGC datasets to support the BGC discovery task using supervised learning. These datasets are prepared to perform binary classification and predict candidate BGC regions in fungal genomes. In addition we analyse the performance of a well supported supervised learning tool developed to predict BGCs.
Deep metric learning (DML) has received much attention in deep learning due to its wide applications in computer vision. Previous studies have focused on designing complicated losses and hard example mining methods, which are mostly heuristic and lack of theoretical understanding. In this paper, we cast DML as a simple pairwise binary classification problem that classifies a pair of examples as similar or dissimilar. It identifies the most critical issue in this problem--imbalanced data pairs. To tackle this issue, we propose a simple and effective framework to sample pairs in a batch of data for updating the model. The key to this framework is to define a robust loss for all pairs over a mini-batch of data, which is formulated by distributionally robust optimization. The flexibility in constructing the uncertainty decision set of the dual variable allows us to recover state-of-the-art complicated losses and also to induce novel variants. Empirical studies on several benchmark data sets demonstrate that our simple and effective method outperforms the state-of-the-art results. Codes are available at: https://github.com/qiqi-helloworld/A-Simple-and-Effective-Framework-for-Pairewise-Distance-Metric-Learning
Anomaly detection is a challenging task that frequently arises in practically all areas of industry and science, from fraud detection and data quality monitoring to finding rare cases of diseases and searching for new physics. Most of the conventional approaches to anomaly detection, such as one-class SVM and Robust Auto-Encoder, are one-class classification methods, i.e. focus on separating normal data from the rest of the space. Such methods are based on the assumption of separability of normal and anomalous classes, and subsequently do not take into account any available samples of anomalies. Nonetheless, in practical settings, some anomalous samples are often available; however, usually in amounts far lower than required for a balanced classification task, and the separability assumption might not always hold. This leads to an important task -- incorporating known anomalous samples into training procedures of anomaly detection models. In this work, we propose a novel model-agnostic training procedure to address this task. We reformulate one-class classification as a binary classification problem with normal data being distinguished from pseudo-anomalous samples. The pseudo-anomalous samples are drawn from low-density regions of a normalizing flow model by feeding tails of the latent distribution into the model. Such an approach allows to easily include known anomalies into the training process of an arbitrary classifier. We demonstrate that our approach shows comparable performance on one-class problems, and, most importantly, achieves comparable or superior results on tasks with variable amounts of known anomalies.
When building a geometric scene understanding system for autonomous vehicles, it is crucial to know when the system might fail. Most contemporary approaches cast the problem as depth regression, whose output is a depth value for each pixel. Such approaches cannot diagnose when failures might occur. One attractive alternative is a deep Bayesian network, which captures uncertainty in both model parameters and ambiguous sensor measurements. However, estimating uncertainties is often slow and the distributions are often limited to be uni-modal. In this paper, we recast the continuous problem of depth regression as discrete binary classification, whose output is an un-normalized distribution over possible depths for each pixel. Such output allows one to reliably and efficiently capture multi-modal depth distributions in ambiguous cases, such as depth discontinuities and reflective surfaces. Results on standard benchmarks show that our method produces accurate depth predictions and significantly better uncertainty estimations than prior art while running near real-time. Finally, by making use of uncertainties of the predicted distribution, we significantly reduce streak-like artifacts and improves accuracy as well as memory efficiency in 3D map reconstruction.
Throughout science and technology, receiver operating characteristic (ROC) curves and associated area under the curve (AUC) measures constitute powerful tools for assessing the predictive abilities of features, markers and tests in binary classification problems. Despite its immense popularity, ROC analysis has been subject to a fundamental restriction, in that it applies to dichotomous (yes or no) outcomes only. Here we introduce ROC movies and universal ROC (UROC) curves that apply to just any linearly ordered outcome, along with an associated coefficient of predictive ability (CPA) measure. CPA equals the area under the UROC curve, and admits appealing interpretations in terms of probabilities and rank based covariances. For binary outcomes CPA equals AUC, and for pairwise distinct outcomes CPA relates linearly to Spearman's coefficient, in the same way that the C index relates linearly to Kendall's coefficient. ROC movies, UROC curves, and CPA nest and generalize the tools of classical ROC analysis, and are bound to supersede them in a wealth of applications. Their usage is illustrated in data examples from biomedicine and meteorology, where rank based measures yield new insights in the WeatherBench comparison of the predictive performance of convolutional neural networks and physical-numerical models for weather prediction.
We present a selective sampling method designed to accelerate the training of deep neural networks. To this end, we introduce a novel measurement, the minimal margin score (MMS), which measures the minimal amount of displacement an input should take until its predicted classification is switched. For multi-class linear classification, the MMS measure is a natural generalization of the margin-based selection criterion, which was thoroughly studied in the binary classification setting. In addition, the MMS measure provides an interesting insight into the progress of the training process and can be useful for designing and monitoring new training regimes. Empirically we demonstrate a substantial acceleration when training commonly used deep neural network architectures for popular image classification tasks. The efficiency of our method is compared against the standard training procedures, and against commonly used selective sampling alternatives: Hard negative mining selection, and Entropy-based selection. Finally, we demonstrate an additional speedup when we adopt a more aggressive learning drop regime while using the MMS selective sampling method.
We consider stochastic second-order methods for minimizing smooth and strongly-convex functions under an interpolation condition satisfied by over-parameterized models. Under this condition, we show that the regularized subsampled Newton method (R-SSN) achieves global linear convergence with an adaptive step-size and a constant batch-size. By growing the batch size for both the subsampled gradient and Hessian, we show that R-SSN can converge at a quadratic rate in a local neighbourhood of the solution. We also show that R-SSN attains local linear convergence for the family of self-concordant functions. Furthermore, we analyze stochastic BFGS algorithms in the interpolation setting and prove their global linear convergence. We empirically evaluate stochastic L-BFGS and a "Hessian-free" implementation of R-SSN for binary classification on synthetic, linearly-separable datasets and real datasets under a kernel mapping. Our experimental results demonstrate the fast convergence of these methods, both in terms of the number of iterations and wall-clock time.