Lab tests are fundamental for diagnosing diseases and monitoring patient conditions. However, frequent testing can be burdensome for patients, and test results may not always be immediately available. To address these challenges, we propose LabTOP, a unified model that predicts lab test outcomes by leveraging a language modeling approach on EHR data. Unlike conventional methods that estimate only a subset of lab tests or classify discrete value ranges, LabTOP performs continuous numerical predictions for a diverse range of lab items. We evaluate LabTOP on three publicly available EHR datasets and demonstrate that it outperforms existing methods, including traditional machine learning models and state-of-the-art large language models. We also conduct extensive ablation studies to confirm the effectiveness of our design choices. We believe that LabTOP will serve as an accurate and generalizable framework for lab test outcome prediction, with potential applications in clinical decision support and early detection of critical conditions.
Large Language Model-based Multi-Agent Systems (LLM-MASs) have demonstrated remarkable real-world capabilities, effectively collaborating to complete complex tasks. While these systems are designed with safety mechanisms, such as rejecting harmful instructions through alignment, their security remains largely unexplored. This gap leaves LLM-MASs vulnerable to targeted disruptions. In this paper, we introduce Contagious Recursive Blocking Attacks (Corba), a novel and simple yet highly effective attack that disrupts interactions between agents within an LLM-MAS. Corba leverages two key properties: its contagious nature allows it to propagate across arbitrary network topologies, while its recursive property enables sustained depletion of computational resources. Notably, these blocking attacks often involve seemingly benign instructions, making them particularly challenging to mitigate using conventional alignment methods. We evaluate Corba on two widely-used LLM-MASs, namely, AutoGen and Camel across various topologies and commercial models. Additionally, we conduct more extensive experiments in open-ended interactive LLM-MASs, demonstrating the effectiveness of Corba in complex topology structures and open-source models. Our code is available at: https://github.com/zhrli324/Corba.
This paper investigates the efficacy of RWKV, a novel language model architecture known for its linear attention mechanism, for generating sentence embeddings in a zero-shot setting. I conduct a layer-wise analysis to evaluate the semantic similarity captured by embeddings from different hidden layers of a pre-trained RWKV model. The performance is assessed on the Microsoft Research Paraphrase Corpus (MRPC) dataset using Spearman correlation and compared against a GloVe-based baseline. My results indicate that while RWKV embeddings capture some semantic relatedness, they underperform compared to the GloVe baseline in terms of Spearman correlation. I also analyze the inference time and GPU memory usage, highlighting the computational trade-offs associated with RWKV embeddings. The findings suggest that while RWKV offers potential advantages in terms of linear scaling, its zero-shot sentence embedding quality for semantic similarity tasks requires further investigation and potential task-specific fine-tuning to match or exceed simpler baselines.
Large language model (LLM)-based agents have shown promise in tackling complex tasks by interacting dynamically with the environment. Existing work primarily focuses on behavior cloning from expert demonstrations and preference learning through exploratory trajectory sampling. However, these methods often struggle in long-horizon tasks, where suboptimal actions accumulate step by step, causing agents to deviate from correct task trajectories. To address this, we highlight the importance of timely calibration and the need to automatically construct calibration trajectories for training agents. We propose Step-Level Trajectory Calibration (STeCa), a novel framework for LLM agent learning. Specifically, STeCa identifies suboptimal actions through a step-level reward comparison during exploration. It constructs calibrated trajectories using LLM-driven reflection, enabling agents to learn from improved decision-making processes. These calibrated trajectories, together with successful trajectory data, are utilized for reinforced training. Extensive experiments demonstrate that STeCa significantly outperforms existing methods. Further analysis highlights that step-level calibration enables agents to complete tasks with greater robustness. Our code and data are available at https://github.com/WangHanLinHenry/STeCa.
Providing high-quality feedback is crucial for student success but is constrained by time, cost, and limited data availability. We introduce Synthetic Educational Feedback Loops (SEFL), a novel framework designed to deliver immediate, on-demand feedback at scale without relying on extensive, real-world student data. In SEFL, two large language models (LLMs) operate in teacher--student roles to simulate assignment completion and formative feedback, generating abundant synthetic pairs of student work and corresponding critiques. We then fine-tune smaller, more computationally efficient LLMs on these synthetic pairs, enabling them to replicate key features of high-quality, goal-oriented feedback. Unlike personalized tutoring approaches that offer multi-turn, individualized instruction, SEFL specifically focuses on replicating the teacher-->student feedback loop for diverse assignments. Through both LLM-as-a-judge and human evaluations, we demonstrate that SEFL-tuned models outperform their non-tuned counterparts in feedback quality, clarity, and timeliness. These findings reveal SEFL's potential to transform feedback processes for higher education and beyond, offering an ethical and scalable alternative to conventional manual feedback cycles.
Masked language modeling has become a widely adopted unsupervised technique to pre-train language models. However, the process of selecting tokens for masking is random, and the percentage of masked tokens is typically fixed for the entire training process. In this paper, we propose to adjust the masking ratio and to decide which tokens to mask based on a novel task-informed anti-curriculum learning scheme. First, we harness task-specific knowledge about useful and harmful tokens in order to determine which tokens to mask. Second, we propose a cyclic decaying masking ratio, which corresponds to an anti-curriculum schedule (from hard to easy). We exemplify our novel task-informed anti-curriculum by masking (TIACBM) approach across three diverse downstream tasks: sentiment analysis, text classification by topic, and authorship attribution. Our findings suggest that TIACBM enhances the ability of the model to focus on key task-relevant features, contributing to statistically significant performance gains across tasks. We release our code at https://github.com/JarcaAndrei/TIACBM.
Current multimodal information retrieval studies mainly focus on single-image inputs, which limits real-world applications involving multiple images and text-image interleaved content. In this work, we introduce the text-image interleaved retrieval (TIIR) task, where the query and document are interleaved text-image sequences, and the model is required to understand the semantics from the interleaved context for effective retrieval. We construct a TIIR benchmark based on naturally interleaved wikiHow tutorials, where a specific pipeline is designed to generate interleaved queries. To explore the task, we adapt several off-the-shelf retrievers and build a dense baseline by interleaved multimodal large language model (MLLM). We then propose a novel Matryoshka Multimodal Embedder (MME), which compresses the number of visual tokens at different granularity, to address the challenge of excessive visual tokens in MLLM-based TIIR models. Experiments demonstrate that simple adaption of existing models does not consistently yield effective results. Our MME achieves significant improvements over the baseline by substantially fewer visual tokens. We provide extensive analysis and will release the dataset and code to facilitate future research.
Explainable recommendation has demonstrated significant advantages in informing users about the logic behind recommendations, thereby increasing system transparency, effectiveness, and trustworthiness. To provide personalized and interpretable explanations, existing works often combine the generation capabilities of large language models (LLMs) with collaborative filtering (CF) information. CF information extracted from the user-item interaction graph captures the user behaviors and preferences, which is crucial for providing informative explanations. However, due to the complexity of graph structure, effectively extracting the CF information from graphs still remains a challenge. Moreover, existing methods often struggle with the integration of extracted CF information with LLMs due to its implicit representation and the modality gap between graph structures and natural language explanations. To address these challenges, we propose G-Refer, a framework using graph retrieval-augmented large language models (LLMs) for explainable recommendation. Specifically, we first employ a hybrid graph retrieval mechanism to retrieve explicit CF signals from both structural and semantic perspectives. The retrieved CF information is explicitly formulated as human-understandable text by the proposed graph translation and accounts for the explanations generated by LLMs. To bridge the modality gap, we introduce knowledge pruning and retrieval-augmented fine-tuning to enhance the ability of LLMs to process and utilize the retrieved CF information to generate explanations. Extensive experiments show that G-Refer achieves superior performance compared with existing methods in both explainability and stability. Codes and data are available at https://github.com/Yuhan1i/G-Refer.
We introduce TESS 2, a general instruction-following diffusion language model that outperforms contemporary instruction-tuned diffusion models, as well as matches and sometimes exceeds strong autoregressive (AR) models. We train TESS 2 by first adapting a strong AR model via continued pretraining with the usual cross-entropy as diffusion loss, and then performing further instruction tuning. We find that adaptation training as well as the choice of the base model is crucial for training good instruction-following diffusion models. We further propose reward guidance, a novel and modular inference-time guidance procedure to align model outputs without needing to train the underlying model. Finally, we show that TESS 2 further improves with increased inference-time compute, highlighting the utility of diffusion LMs in having fine-grained controllability over the amount of compute used at inference time. Code and models are available at https://github.com/hamishivi/tess-2.
LLM-based user agents, which simulate user interaction behavior, are emerging as a promising approach to enhancing recommender systems. In real-world scenarios, users' interactions often exhibit cross-domain characteristics and are influenced by others. However, the memory design in current methods causes user agents to introduce significant irrelevant information during decision-making in cross-domain scenarios and makes them unable to recognize the influence of other users' interactions, such as popularity factors. To tackle this issue, we propose a dual-layer memory architecture combined with a two-step fusion mechanism. This design avoids irrelevant information during decision-making while ensuring effective integration of cross-domain preferences. We also introduce the concepts of interest groups and group-shared memory to better capture the influence of popularity factors on users with similar interests. Comprehensive experiments validate the effectiveness of AgentCF++. Our code is available at https://github.com/jhliu0807/AgentCF-plus.
Data augmentation is necessary for graph representation learning due to the scarcity and noise present in graph data. Most of the existing augmentation methods overlook the context information inherited from the dataset as they rely solely on the graph structure for augmentation. Despite the success of some large language model-based (LLM) graph learning methods, they are mostly white-box which require access to the weights or latent features from the open-access LLMs, making them difficult to be democratized for everyone as existing LLMs are mostly closed-source for commercial considerations. To overcome these limitations, we propose a black-box context-driven graph data augmentation approach, with the guidance of LLMs -- DemoGraph. Leveraging the text prompt as context-related information, we task the LLM with generating knowledge graphs (KGs), which allow us to capture the structural interactions from the text outputs. We then design a dynamic merging schema to stochastically integrate the LLM-generated KGs into the original graph during training. To control the sparsity of the augmented graph, we further devise a granularity-aware prompting strategy and an instruction fine-tuning module, which seamlessly generates text prompts according to different granularity levels of the dataset. Extensive experiments on various graph learning tasks validate the effectiveness of our method over existing graph data augmentation methods. Notably, our approach excels in scenarios involving electronic health records (EHRs), which validates its maximal utilization of contextual knowledge, leading to enhanced predictive performance and interpretability.
Direct Preference Optimization (DPO) demonstrates the advantage of aligning a large language model with human preference using only an offline dataset. However, DPO has the limitation that the KL penalty, which prevents excessive deviation from the reference model, is static throughout the training process. Several methods claim to change this static KL penalty of DPO into a dynamic one, but no approach can adaptively assign different KL penalties for each preference pair. In this paper, we propose $\varepsilon$-Direct Preference Optimization ($\varepsilon$-DPO), which allows adaptive control of the KL penalty strength $\beta$ for each preference pair. Specifically, $\varepsilon$-DPO adaptively controls $\beta$ for each preference pair based on the monotonicity of logits as a preference model under the perturbation of $\beta$ during training. This is equivalent to adjusting the KL penalty by checking whether the change in training-time temperature can lead to better preference confidence as preference models by simply reusing the logit of the current policy and the reference policy. Experimental results show that the simple criterion of $\varepsilon$-DPO for KL penalty relaxation significantly improves DPO compared to most existing direct alignment algorithms on general chatbot benchmarks and reveal that this KL penalty control criterion can reflect confusion as a preference model and provide an efficient KL trade-off, highlighting the significance of instance-level adaptive KL penalty control in DPO.
3D molecule generation is crucial for drug discovery and material design. While prior efforts focus on 3D diffusion models for their benefits in modeling continuous 3D conformers, they overlook the advantages of 1D SELFIES-based Language Models (LMs), which can generate 100% valid molecules and leverage the billion-scale 1D molecule datasets. To combine these advantages for 3D molecule generation, we propose a foundation model -- NExT-Mol: 3D Diffusion Meets 1D Language Modeling for 3D Molecule Generation. NExT-Mol uses an extensively pretrained molecule LM for 1D molecule generation, and subsequently predicts the generated molecule's 3D conformers with a 3D diffusion model. We enhance NExT-Mol's performance by scaling up the LM's model size, refining the diffusion neural architecture, and applying 1D to 3D transfer learning. Notably, our 1D molecule LM significantly outperforms baselines in distributional similarity while ensuring validity, and our 3D diffusion model achieves leading performances in conformer prediction. Given these improvements in 1D and 3D modeling, NExT-Mol achieves a 26% relative improvement in 3D FCD for de novo 3D generation on GEOM-DRUGS, and a 13% average relative gain for conditional 3D generation on QM9-2014. Our codes and pretrained checkpoints are available at https://github.com/acharkq/NExT-Mol.
Despite the prevalence of sleep-tracking devices, many individuals struggle to translate data into actionable improvements in sleep health. Current methods often provide data-driven suggestions but may not be feasible and adaptive to real-life constraints and individual contexts. We present HealthGuru, a novel large language model-powered chatbot to enhance sleep health through data-driven, theory-guided, and adaptive recommendations with conversational behavior change support. HealthGuru's multi-agent framework integrates wearable device data, contextual information, and a contextual multi-armed bandit model to suggest tailored sleep-enhancing activities. The system facilitates natural conversations while incorporating data-driven insights and theoretical behavior change techniques. Our eight-week in-the-wild deployment study with 16 participants compared HealthGuru to a baseline chatbot. Results show improved metrics like sleep duration and activity scores, higher quality responses, and increased user motivation for behavior change with HealthGuru. We also identify challenges and design considerations for personalization and user engagement in health chatbots.
Usability testing is a fundamental yet challenging (e.g., inflexible to iterate the study design flaws and hard to recruit study participants) research method for user experience (UX) researchers to evaluate a web design. Recent advances in Large Language Model-simulated Agent (LLM-Agent) research inspired us to design UXAgent to support UX researchers in evaluating and reiterating their usability testing study design before they conduct the real human subject study. Our system features an LLM-Agent module and a universal browser connector module so that UX researchers can automatically generate thousands of simulated users to test the target website. The results are shown in qualitative (e.g., interviewing how an agent thinks ), quantitative (e.g., # of actions), and video recording formats for UX researchers to analyze. Through a heuristic user evaluation with five UX researchers, participants praised the innovation of our system but also expressed concerns about the future of LLM Agent-assisted UX study.
Negation is a fundamental aspect of human communication, yet it remains a challenge for Language Models (LMs) in Information Retrieval (IR). Despite the heavy reliance of modern neural IR systems on LMs, little attention has been given to their handling of negation. In this study, we reproduce and extend the findings of NevIR, a benchmark study that revealed most IR models perform at or below the level of random ranking when dealing with negation. We replicate NevIR's original experiments and evaluate newly developed state-of-the-art IR models. Our findings show that a recently emerging category-listwise Large Language Model (LLM) re-rankers-outperforms other models but still underperforms human performance. Additionally, we leverage ExcluIR, a benchmark dataset designed for exclusionary queries with extensive negation, to assess the generalisability of negation understanding. Our findings suggest that fine-tuning on one dataset does not reliably improve performance on the other, indicating notable differences in their data distributions. Furthermore, we observe that only cross-encoders and listwise LLM re-rankers achieve reasonable performance across both negation tasks.
While recent advancements in reasoning optimization have significantly enhanced the capabilities of large language models (LLMs), existing efforts to improve reasoning have been limited to solving mathematical problems and focusing on visual graphical inputs, neglecting broader applications in general video understanding.This paper proposes video-SALMONN-o1, the first open-source reasoning-enhanced audio-visual LLM designed for general video understanding tasks. To enhance its reasoning abilities, we develop a reasoning-intensive dataset featuring challenging audio-visual questions with step-by-step solutions. We also propose process direct preference optimization (pDPO), which leverages contrastive step selection to achieve efficient step-level reward modelling tailored for multimodal inputs. Additionally, we introduce RivaBench, the first reasoning-intensive video understanding benchmark, featuring over 4,000 high-quality, expert-curated question-answer pairs across scenarios such as standup comedy, academic presentations, and synthetic video detection. video-SALMONN-o1 achieves 3-8% accuracy improvements over the LLaVA-OneVision baseline across different video reasoning benchmarks. Besides, pDPO achieves 6-8% improvements compared to the supervised fine-tuning model on RivaBench. Enhanced reasoning enables video-SALMONN-o1 zero-shot synthetic video detection capabilities.
Diffusion models have emerged as a promising alternative to autoregressive models in modeling discrete categorical data. Yet diffusion models that directly work on discrete data space do not fully exploit the power of iterative refinement, as the signals are lost during the transition between discrete states. Existing continuous diffusion models for discrete data have limited performance compared to discrete approaches, and the unclear link between them restricts the development of diffusion models for discrete data. In this work, we propose a continuous diffusion model for language modeling that incorporates the geometry of the underlying categorical distribution. We establish a connection between the discrete diffusion and continuous flow on the statistical manifold, and building on the analogy, we introduce a simple design for the diffusion process that generalizes previous discrete diffusion models. We further propose a simulation-free training framework based on radial symmetry and a simple technique to address the high dimensionality of the manifold. Comprehensive experiments on language modeling benchmarks and other modalities show that our method outperforms existing discrete diffusion models and approaches the performance of autoregressive models. Codes available at \href{https://github.com/harryjo97/RDLM}{https://github.com/harryjo97/RDLM}.
Electrocardiogram (ECG) is essential for the clinical diagnosis of arrhythmias and other heart diseases, but deep learning methods based on ECG often face limitations due to the need for high-quality annotations. Although previous ECG self-supervised learning (eSSL) methods have made significant progress in representation learning from unannotated ECG data, they typically treat ECG signals as ordinary time-series data, segmenting the signals using fixed-size and fixed-step time windows, which often ignore the form and rhythm characteristics and latent semantic relationships in ECG signals. In this work, we introduce a novel perspective on ECG signals, treating heartbeats as words and rhythms as sentences. Based on this perspective, we first designed the QRS-Tokenizer, which generates semantically meaningful ECG sentences from the raw ECG signals. Building on these, we then propose HeartLang, a novel self-supervised learning framework for ECG language processing, learning general representations at form and rhythm levels. Additionally, we construct the largest heartbeat-based ECG vocabulary to date, which will further advance the development of ECG language processing. We evaluated HeartLang across six public ECG datasets, where it demonstrated robust competitiveness against other eSSL methods. Our data and code are publicly available at https://github.com/PKUDigitalHealth/HeartLang.
We present HealthGPT, a powerful Medical Large Vision-Language Model (Med-LVLM) that integrates medical visual comprehension and generation capabilities within a unified autoregressive paradigm. Our bootstrapping philosophy is to progressively adapt heterogeneous comprehension and generation knowledge to pre-trained large language models (LLMs). This is achieved through a novel heterogeneous low-rank adaptation (H-LoRA) technique, which is complemented by a tailored hierarchical visual perception approach and a three-stage learning strategy. To effectively learn the HealthGPT, we devise a comprehensive medical domain-specific comprehension and generation dataset called VL-Health. Experimental results demonstrate exceptional performance and scalability of HealthGPT in medical visual unified tasks. Our project can be accessed at https://github.com/DCDmllm/HealthGPT.