Few-shot document-level relation extraction suffers from poor performance due to the challenging cross-domain transferability of NOTA (none-of-the-above) relation representation. In this paper, we introduce a Transferable Proto-Learning Network (TPN) to address the challenging issue. It comprises three core components: Hybrid Encoder hierarchically encodes semantic content of input text combined with attention information to enhance the relation representations. As a plug-and-play module for Out-of-Domain (OOD) Detection, Transferable Proto-Learner computes NOTA prototype through an adaptive learnable block, effectively mitigating NOTA bias across various domains. Dynamic Weighting Calibrator detects relation-specific classification confidence, serving as dynamic weights to calibrate the NOTA-dominant loss function. Finally, to bolster the model's cross-domain performance, we complement it with virtual adversarial training (VAT). We conduct extensive experimental analyses on FREDo and ReFREDo, demonstrating the superiority of TPN. Compared to state-of-the-art methods, our approach achieves competitive performance with approximately half the parameter size. Data and code are available at https://github.com/EchoDreamer/TPN.
Few-shot Continual Relations Extraction (FCRE) is an emerging and dynamic area of study where models can sequentially integrate knowledge from new relations with limited labeled data while circumventing catastrophic forgetting and preserving prior knowledge from pre-trained backbones. In this work, we introduce a novel method that leverages often-discarded language model heads. By employing these components via a mutual information maximization strategy, our approach helps maintain prior knowledge from the pre-trained backbone and strategically aligns the primary classification head, thereby enhancing model performance. Furthermore, we explore the potential of Large Language Models (LLMs), renowned for their wealth of knowledge, in addressing FCRE challenges. Our comprehensive experimental results underscore the efficacy of the proposed method and offer valuable insights for future work.
Modeling and leveraging layout reading order in visually-rich documents (VrDs) is critical in document intelligence as it captures the rich structure semantics within documents. Previous works typically formulated layout reading order as a permutation of layout elements, i.e. a sequence containing all the layout elements. However, we argue that this formulation does not adequately convey the complete reading order information in the layout, which may potentially lead to performance decline in downstream VrD tasks. To address this issue, we propose to model the layout reading order as ordering relations over the set of layout elements, which have sufficient expressive capability for the complete reading order information. To enable empirical evaluation on methods towards the improved form of reading order prediction (ROP), we establish a comprehensive benchmark dataset including the reading order annotation as relations over layout elements, together with a relation-extraction-based method that outperforms previous methods. Moreover, to highlight the practical benefits of introducing the improved form of layout reading order, we propose a reading-order-relation-enhancing pipeline to improve model performance on any arbitrary VrD task by introducing additional reading order relation inputs. Comprehensive results demonstrate that the pipeline generally benefits downstream VrD tasks: (1) with utilizing the reading order relation information, the enhanced downstream models achieve SOTA results on both two task settings of the targeted dataset; (2) with utilizing the pseudo reading order information generated by the proposed ROP model, the performance of the enhanced models has improved across all three models and eight cross-domain VrD-IE/QA task settings without targeted optimization.
Objective: To develop a corpus annotated for diet-microbiome associations from the biomedical literature and train natural language processing (NLP) models to identify these associations, thereby improving the understanding of their role in health and disease, and supporting personalized nutrition strategies. Materials and Methods: We constructed DiMB-RE, a comprehensive corpus annotated with 15 entity types (e.g., Nutrient, Microorganism) and 13 relation types (e.g., INCREASES, IMPROVES) capturing diet-microbiome associations. We fine-tuned and evaluated state-of-the-art NLP models for named entity, trigger, and relation extraction as well as factuality detection using DiMB-RE. In addition, we benchmarked two generative large language models (GPT-4o-mini and GPT-4o) on a subset of the dataset in zero- and one-shot settings. Results: DiMB-RE consists of 14,450 entities and 4,206 relationships from 165 publications (including 30 full-text Results sections). Fine-tuned NLP models performed reasonably well for named entity recognition (0.800 F1 score), while end-to-end relation extraction performance was modest (0.445 F1). The use of Results section annotations improved relation extraction. The impact of trigger detection was mixed. Generative models showed lower accuracy compared to fine-tuned models. Discussion: To our knowledge, DiMB-RE is the largest and most diverse corpus focusing on diet-microbiome interactions. NLP models fine-tuned on DiMB-RE exhibit lower performance compared to similar corpora, highlighting the complexity of information extraction in this domain. Misclassified entities, missed triggers, and cross-sentence relations are the major sources of relation extraction errors. Conclusions: DiMB-RE can serve as a benchmark corpus for biomedical literature mining. DiMB-RE and the NLP models are available at https://github.com/ScienceNLP-Lab/DiMB-RE.
With the rapid growth of the Natural Language Processing (NLP) field, a vast variety of Large Language Models (LLMs) continue to emerge for diverse NLP tasks. As more papers are published, researchers and developers face the challenge of information overload. Thus, developing a system that can automatically extract and organise key information about LLMs from academic papers is particularly important. The standard format for documenting information about LLMs is the LLM model card (\textbf{LLM-Card}). We propose a method for automatically generating LLM model cards from scientific publications. We use Named Entity Recognition (\textbf{NER}) and Relation Extraction (\textbf{RE}) methods that automatically extract key information about LLMs from the papers, helping researchers to access information about LLMs efficiently. These features include model \textit{licence}, model \textit{name}, and model \textit{application}. With these features, we can form a model card for each paper. We processed 106 academic papers by defining three dictionaries -- LLM's name, licence, and application. 11,051 sentences were extracted through dictionary lookup, and the dataset was constructed through manual review of the final selection of 129 sentences with a link between the name and the \textit{licence}, and 106 sentences with a link between the model name and the \textit{application}. The resulting resource is relevant for LLM card illustrations using relational knowledge graphs. Our code and findings can contribute to automatic LLM card generation. Data and code in \textsc{autoLLM-Card} will be shared and freely available at \url{https://github.com/shengwei-tian/dependency-parser-visualization}
NLP datasets may still contain annotation errors, even when they are manually annotated. Researchers have attempted to develop methods to automatically reduce the adverse effect of errors in datasets. However, existing methods are time-consuming because they require many trained models to detect errors. This paper proposes a time-saving method that utilizes a tokenization technique called subword regularization to simulate multiple error detection models for detecting errors. Our proposed method, SubRegWeigh, can perform annotation weighting four to five times faster than the existing method. Additionally, SubRegWeigh improved performance in document classification and named entity recognition tasks. In experiments with pseudo-incorrect labels, SubRegWeigh clearly identifies pseudo-incorrect labels as annotation errors. Our code is available at https://github.com/4ldk/SubRegWeigh .
Relation extraction is a Natural Language Processing task that aims to extract relationships from textual data. It is a critical step for information extraction. Due to its wide-scale applicability, research in relation extraction has rapidly scaled to using highly advanced neural networks. Despite their computational superiority, modern relation extractors fail to handle complicated extraction scenarios. However, a comprehensive performance analysis of the state-of-the-art extractors that compile these challenges has been missing from the literature, and this paper aims to bridge this gap. The goal has been to investigate the possible data-centric characteristics that impede neural relation extraction. Based on extensive experiments conducted using 15 state-of-the-art relation extraction algorithms ranging from recurrent architectures to large language models and seven large-scale datasets, this research suggests that modern relation extractors are not robust to complex data and relation characteristics. It emphasizes pivotal issues, such as contextual ambiguity, correlating relations, long-tail data, and fine-grained relation distributions. In addition, it sets a marker for future directions to alleviate these issues, thereby proving to be a critical resource for novice and advanced researchers. Efficient handling of the challenges described can have significant implications for the field of information extraction, which is a critical part of popular systems such as search engines and chatbots. Data and relevant code can be found at \url{https://aaig.ece.ufl.edu/projects/relation-extraction}.
Clinical notes contain unstructured representations of patient histories, including the relationships between medical problems and prescription drugs. To investigate the relationship between cancer drugs and their associated symptom burden, we extract structured, semantic representations of medical problem and drug information from the clinical narratives of oncology notes. We present Clinical Concept Annotations for Cancer Events and Relations (CACER), a novel corpus with fine-grained annotations for over 48,000 medical problems and drug events and 10,000 drug-problem and problem-problem relations. Leveraging CACER, we develop and evaluate transformer-based information extraction (IE) models such as BERT, Flan-T5, Llama3, and GPT-4 using fine-tuning and in-context learning (ICL). In event extraction, the fine-tuned BERT and Llama3 models achieved the highest performance at 88.2-88.0 F1, which is comparable to the inter-annotator agreement (IAA) of 88.4 F1. In relation extraction, the fine-tuned BERT, Flan-T5, and Llama3 achieved the highest performance at 61.8-65.3 F1. GPT-4 with ICL achieved the worst performance across both tasks. The fine-tuned models significantly outperformed GPT-4 in ICL, highlighting the importance of annotated training data and model optimization. Furthermore, the BERT models performed similarly to Llama3. For our task, LLMs offer no performance advantage over the smaller BERT models. The results emphasize the need for annotated training data to optimize models. Multiple fine-tuned transformer models achieved performance comparable to IAA for several extraction tasks.
Most available data is unstructured, making it challenging to access valuable information. Automatically building Knowledge Graphs (KGs) is crucial for structuring data and making it accessible, allowing users to search for information effectively. KGs also facilitate insights, inference, and reasoning. Traditional NLP methods, such as named entity recognition and relation extraction, are key in information retrieval but face limitations, including the use of predefined entity types and the need for supervised learning. Current research leverages large language models' capabilities, such as zero- or few-shot learning. However, unresolved and semantically duplicated entities and relations still pose challenges, leading to inconsistent graphs and requiring extensive post-processing. Additionally, most approaches are topic-dependent. In this paper, we propose iText2KG, a method for incremental, topic-independent KG construction without post-processing. This plug-and-play, zero-shot method is applicable across a wide range of KG construction scenarios and comprises four modules: Document Distiller, Incremental Entity Extractor, Incremental Relation Extractor, and Graph Integrator and Visualization. Our method demonstrates superior performance compared to baseline methods across three scenarios: converting scientific papers to graphs, websites to graphs, and CVs to graphs.
The relation extraction (RE) in complex scenarios faces challenges such as diverse relation types and ambiguous relations between entities within a single sentence, leading to the poor performance of pure "text-in, text-out" language models (LMs). To address these challenges, in this paper, we propose an agent-based RE framework, namely AgentRE, which fully leverages the potential of large language models (LLMs) including memory, retrieval and reflection, to achieve RE in complex scenarios. Specifically, three major modules are built in AgentRE serving as the tools to help the agent acquire and process various useful information, thereby obtaining improved RE performance. Our extensive experimental results upon two datasets in English and Chinese demonstrate our AgentRE's superior performance, especially in low-resource scenarios. Additionally, the trajectories generated by AgentRE can be refined to construct a high-quality training dataset incorporating different reasoning methods, which can be used to fine-tune smaller models. Code is available at https://github.com/Lightblues/AgentRE.
Large language models (LLMs) have created a new paradigm for natural language processing. Despite their advancement, LLM-based methods still lag behind traditional approaches in document-level relation extraction (DocRE), a critical task for understanding complex entity relations within long context. This paper investigates the causes of this performance gap, identifying the dispersion of attention by LLMs due to entity pairs without relations as a key factor. We then introduce a novel classifier-LLM approach to DocRE. Particularly, the proposed approach begins with a classifier designed to select entity pair candidates that exhibit potential relations and then feed them to LLM for final relation classification. This method ensures that the LLM's attention is directed at relation-expressing entity pairs instead of those without relations during inference. Experiments on DocRE benchmarks reveal that our method significantly outperforms recent LLM-based DocRE models and narrows the performance gap with state-of-the-art BERT-based models.
Entity Linking (EL) and Relation Extraction (RE) are fundamental tasks in Natural Language Processing, serving as critical components in a wide range of applications. In this paper, we propose ReLiK, a Retriever-Reader architecture for both EL and RE, where, given an input text, the Retriever module undertakes the identification of candidate entities or relations that could potentially appear within the text. Subsequently, the Reader module is tasked to discern the pertinent retrieved entities or relations and establish their alignment with the corresponding textual spans. Notably, we put forward an innovative input representation that incorporates the candidate entities or relations alongside the text, making it possible to link entities or extract relations in a single forward pass and to fully leverage pre-trained language models contextualization capabilities, in contrast with previous Retriever-Reader-based methods, which require a forward pass for each candidate. Our formulation of EL and RE achieves state-of-the-art performance in both in-domain and out-of-domain benchmarks while using academic budget training and with up to 40x inference speed compared to competitors. Finally, we show how our architecture can be used seamlessly for Information Extraction (cIE), i.e. EL + RE, and setting a new state of the art by employing a shared Reader that simultaneously extracts entities and relations.
Large Language Models (LLMs) have demonstrated unprecedented prowess across various natural language processing tasks in various application domains. Recent studies show that LLMs can be leveraged to perform lexical semantic tasks, such as Knowledge Base Completion (KBC) or Ontology Learning (OL). However, it has not effectively been verified whether their success is due to their ability to reason over unstructured or semi-structured data, or their effective learning of linguistic patterns and senses alone. This unresolved question is particularly crucial when dealing with domain-specific data, where the lexical senses and their meaning can completely differ from what a LLM has learned during its training stage. This paper investigates the following question: Do LLMs really adapt to domains and remain consistent in the extraction of structured knowledge, or do they only learn lexical senses instead of reasoning? To answer this question and, we devise a controlled experiment setup that uses WordNet to synthesize parallel corpora, with English and gibberish terms. We examine the differences in the outputs of LLMs for each corpus in two OL tasks: relation extraction and taxonomy discovery. Empirical results show that, while adapting to the gibberish corpora, off-the-shelf LLMs do not consistently reason over semantic relationships between concepts, and instead leverage senses and their frame. However, fine-tuning improves the performance of LLMs on lexical semantic tasks even when the domain-specific terms are arbitrary and unseen during pre-training, hinting at the applicability of pre-trained LLMs for OL.
Large Language Models (LLMs) have demonstrated proficiency in a wide array of natural language processing tasks. However, its effectiveness over discourse-level event relation extraction (ERE) tasks remains unexplored. In this paper, we assess the effectiveness of LLMs in addressing discourse-level ERE tasks characterized by lengthy documents and intricate relations encompassing coreference, temporal, causal, and subevent types. Evaluation is conducted using an commercial model, GPT-3.5, and an open-source model, LLaMA-2. Our study reveals a notable underperformance of LLMs compared to the baseline established through supervised learning. Although Supervised Fine-Tuning (SFT) can improve LLMs performance, it does not scale well compared to the smaller supervised baseline model. Our quantitative and qualitative analysis shows that LLMs have several weaknesses when applied for extracting event relations, including a tendency to fabricate event mentions, and failures to capture transitivity rules among relations, detect long distance relations, or comprehend contexts with dense event mentions.
Few-Shot Relation Extraction (FSRE), a subtask of Relation Extraction (RE) that utilizes limited training instances, appeals to more researchers in Natural Language Processing (NLP) due to its capability to extract textual information in extremely low-resource scenarios. The primary methodologies employed for FSRE have been fine-tuning or prompt tuning techniques based on Pre-trained Language Models (PLMs). Recently, the emergence of Large Language Models (LLMs) has prompted numerous researchers to explore FSRE through In-Context Learning (ICL). However, there are substantial limitations associated with methods based on either traditional RE models or LLMs. Traditional RE models are hampered by a lack of necessary prior knowledge, while LLMs fall short in their task-specific capabilities for RE. To address these shortcomings, we propose a Dual-System Augmented Relation Extractor (DSARE), which synergistically combines traditional RE models with LLMs. Specifically, DSARE innovatively injects the prior knowledge of LLMs into traditional RE models, and conversely enhances LLMs' task-specific aptitude for RE through relation extraction augmentation. Moreover, an Integrated Prediction module is employed to jointly consider these two respective predictions and derive the final results. Extensive experiments demonstrate the efficacy of our proposed method.
Many datasets have been developed to train and evaluate document-level relation extraction (RE) models. Most of these are constructed using real-world data. It has been shown that RE models trained on real-world data suffer from factual biases. To evaluate and address this issue, we present CovEReD, a counterfactual data generation approach for document-level relation extraction datasets using entity replacement. We first demonstrate that models trained on factual data exhibit inconsistent behavior: while they accurately extract triples from factual data, they fail to extract the same triples after counterfactual modification. This inconsistency suggests that models trained on factual data rely on spurious signals such as specific entities and external knowledge $\unicode{x2013}$ rather than on the input context $\unicode{x2013}$ to extract triples. We show that by generating document-level counterfactual data with CovEReD and training models on them, consistency is maintained with minimal impact on RE performance. We release our CovEReD pipeline as well as Re-DocRED-CF, a dataset of counterfactual RE documents, to assist in evaluating and addressing inconsistency in document-level RE.
Cross-document Relation Extraction aims to predict the relation between target entities located in different documents. In this regard, the dominant models commonly retain useful information for relation prediction via bridge entities, which allows the model to elaborately capture the intrinsic interdependence between target entities. However, these studies ignore the non-bridge entities, each of which co-occurs with only one target entity and offers the semantic association between target entities for relation prediction. Besides, the commonly-used dataset--CodRED contains substantial NA instances, leading to the prediction bias during inference. To address these issues, in this paper, we propose a novel graph-based cross-document RE model with non-bridge entity enhancement and prediction debiasing. Specifically, we use a unified entity graph to integrate numerous non-bridge entities with target entities and bridge entities, modeling various associations between them, and then use a graph recurrent network to encode this graph. Finally, we introduce a novel debiasing strategy to calibrate the original prediction distribution. Experimental results on the closed and open settings show that our model significantly outperforms all baselines, including the GPT-3.5-turbo and InstructUIE, achieving state-of-the-art performance. Particularly, our model obtains 66.23% and 55.87% AUC points in the official leaderboard\footnote{\url{https://codalab.lisn.upsaclay.fr/competitions/3770#results}} under the two settings, respectively, ranking the first place in all submissions since December 2023. Our code is available at https://github.com/DeepLearnXMU/CoRE-NEPD.
Relation Extraction (RE) serves as a crucial technology for transforming unstructured text into structured information, especially within the framework of Knowledge Graph development. Its importance is emphasized by its essential role in various downstream tasks. Besides the conventional RE methods which are based on neural networks and pre-trained language models, large language models (LLMs) are also utilized in the research field of RE. However, on low-resource languages (LRLs), both conventional RE methods and LLM-based methods perform poorly on RE due to the data scarcity issues. To this end, this paper constructs low-resource relation extraction datasets in 10 LRLs in three regions (Central Asia, Southeast Asia and Middle East). The corpora are constructed by translating the original publicly available English RE datasets (NYT10, FewRel and CrossRE) using an effective multilingual machine translation. Then, we use the language perplexity (PPL) to filter out the low-quality data from the translated datasets. Finally, we conduct an empirical study and validate the performance of several open-source LLMs on these generated LRL RE datasets.
This paper presents the first study for temporal relation extraction in a zero-shot setting focusing on biomedical text. We employ two types of prompts and five LLMs (GPT-3.5, Mixtral, Llama 2, Gemma, and PMC-LLaMA) to obtain responses about the temporal relations between two events. Our experiments demonstrate that LLMs struggle in the zero-shot setting performing worse than fine-tuned specialized models in terms of F1 score, showing that this is a challenging task for LLMs. We further contribute a novel comprehensive temporal analysis by calculating consistency scores for each LLM. Our findings reveal that LLMs face challenges in providing responses consistent to the temporal properties of uniqueness and transitivity. Moreover, we study the relation between the temporal consistency of an LLM and its accuracy and whether the latter can be improved by solving temporal inconsistencies. Our analysis shows that even when temporal consistency is achieved, the predictions can remain inaccurate.
Predicting unseen relations that cannot be observed during the training phase is a challenging task in relation extraction. Previous works have made progress by matching the semantics between input instances and label descriptions. However, fine-grained matching often requires laborious manual annotation, and rich interactions between instances and label descriptions come with significant computational overhead. In this work, we propose an efficient multi-grained matching approach that uses virtual entity matching to reduce manual annotation cost, and fuses coarse-grained recall and fine-grained classification for rich interactions with guaranteed inference speed. Experimental results show that our approach outperforms the previous State Of The Art (SOTA) methods, and achieves a balance between inference efficiency and prediction accuracy in zero-shot relation extraction tasks. Our code is available at https://github.com/longls777/EMMA.