Foundation models like ChatGPT and GPT-4 have revolutionized artificial intelligence, exhibiting remarkable abilities to generalize across a wide array of tasks and applications beyond their initial training objectives. However, graph learning has predominantly focused on single-graph models, tailored to specific tasks or datasets, lacking the ability to transfer learned knowledge to different domains. This limitation stems from the inherent complexity and diversity of graph structures, along with the different feature and label spaces specific to graph data. In this paper, we recognize text as an effective unifying medium and employ Text-Attributed Graphs (TAGs) to leverage this potential. We present our UniGraph framework, designed to learn a foundation model for TAGs, which is capable of generalizing to unseen graphs and tasks across diverse domains. Unlike single-graph models that use pre-computed node features of varying dimensions as input, our approach leverages textual features for unifying node representations, even for graphs such as molecular graphs that do not naturally have textual features. We propose a novel cascaded architecture of Language Models (LMs) and Graph Neural Networks (GNNs) as backbone networks. Additionally, we propose the first pre-training algorithm specifically designed for large-scale self-supervised learning on TAGs, based on Masked Graph Modeling. We introduce graph instruction tuning using Large Language Models (LLMs) to enable zero-shot prediction ability. Our comprehensive experiments across various graph learning tasks and domains demonstrate the model's effectiveness in self-supervised representation learning on unseen graphs, few-shot in-context transfer, and zero-shot transfer, even surpassing or matching the performance of GNNs that have undergone supervised training on target datasets.
With the development of foundation models such as large language models, zero-shot transfer learning has become increasingly significant. This is highlighted by the generative capabilities of NLP models like GPT-4, and the retrieval-based approaches of CV models like CLIP, both of which effectively bridge the gap between seen and unseen data. In the realm of graph learning, the continuous emergence of new graphs and the challenges of human labeling also amplify the necessity for zero-shot transfer learning, driving the exploration of approaches that can generalize across diverse graph data without necessitating dataset-specific and label-specific fine-tuning. In this study, we extend such paradigms to zero-shot transferability in graphs by introducing ZeroG, a new framework tailored to enable cross-dataset generalization. Addressing the inherent challenges such as feature misalignment, mismatched label spaces, and negative transfer, we leverage a language model to encode both node attributes and class semantics, ensuring consistent feature dimensions across datasets. We also propose a prompt-based subgraph sampling module that enriches the semantic information and structure information of extracted subgraphs using prompting nodes and neighborhood aggregation, respectively. We further adopt a lightweight fine-tuning strategy that reduces the risk of overfitting and maintains the zero-shot learning efficacy of the language model. The results underscore the effectiveness of our model in achieving significant cross-dataset zero-shot transferability, opening pathways for the development of graph foundation models. Codes and data are available at https://github.com/NineAbyss/ZeroG.
Continual learning on graph data has recently attracted paramount attention for its aim to resolve the catastrophic forgetting problem on existing tasks while adapting the sequentially updated model to newly emerged graph tasks. While there have been efforts to summarize progress on continual learning research over Euclidean data, e.g., images and texts, a systematic review of progress in continual learning on graphs, a.k.a, continual graph learning (CGL) or lifelong graph learning, is still demanding. Graph data are far more complex in terms of data structures and application scenarios, making CGL task settings, model designs, and applications extremely challenging. To bridge the gap, we provide a comprehensive review of existing continual graph learning (CGL) algorithms by elucidating the different task settings and categorizing the existing methods based on their characteristics. We compare the CGL methods with traditional continual learning techniques and analyze the applicability of the traditional continual learning techniques to CGL tasks. Additionally, we review the benchmark works that are crucial to CGL research. Finally, we discuss the remaining challenges and propose several future directions. We will maintain an up-to-date GitHub repository featuring a comprehensive list of CGL algorithms, accessible at https://github.com/UConn-DSIS/Survey-of-Continual-Learning-on-Graphs.
Graph Neural Networks (GNNs) have demonstrated their effectiveness in various graph learning tasks, yet their reliance on neighborhood aggregation during inference poses challenges for deployment in latency-sensitive applications, such as real-time financial fraud detection. To address this limitation, recent studies have proposed distilling knowledge from teacher GNNs into student Multi-Layer Perceptrons (MLPs) trained on node content, aiming to accelerate inference. However, these approaches often inadequately explore structural information when inferring unseen nodes. To this end, we introduce SimMLP, a Self-supervised framework for learning MLPs on graphs, designed to fully integrate rich structural information into MLPs. Notably, SimMLP is the first MLP-learning method that can achieve equivalence to GNNs in the optimal case. The key idea is to employ self-supervised learning to align the representations encoded by graph context-aware GNNs and neighborhood dependency-free MLPs, thereby fully integrating the structural information into MLPs. We provide a comprehensive theoretical analysis, demonstrating the equivalence between SimMLP and GNNs based on mutual information and inductive bias, highlighting SimMLP's advanced structural learning capabilities. Additionally, we conduct extensive experiments on 20 benchmark datasets, covering node classification, link prediction, and graph classification, to showcase SimMLP's superiority over state-of-the-art baselines, particularly in scenarios involving unseen nodes (e.g., inductive and cold-start node classification) where structural insights are crucial. Our codes are available at: https://github.com/Zehong-Wang/SimMLP.
We propose a novel Spatio-Temporal Graph Neural Network empowered trend analysis approach (ST-GTrend) to perform fleet-level performance degradation analysis for Photovoltaic (PV) power networks. PV power stations have become an integral component to the global sustainable energy production landscape. Accurately estimating the performance of PV systems is critical to their feasibility as a power generation technology and as a financial asset. One of the most challenging problems in assessing the Levelized Cost of Energy (LCOE) of a PV system is to understand and estimate the long-term Performance Loss Rate (PLR) for large fleets of PV inverters. ST-GTrend integrates spatio-temporal coherence and graph attention to separate PLR as a long-term "aging" trend from multiple fluctuation terms in the PV input data. To cope with diverse degradation patterns in timeseries, ST-GTrend adopts a paralleled graph autoencoder array to extract aging and fluctuation terms simultaneously. ST-GTrend imposes flatness and smoothness regularization to ensure the disentanglement between aging and fluctuation. To scale the analysis to large PV systems, we also introduce Para-GTrend, a parallel algorithm to accelerate the training and inference of ST-GTrend. We have evaluated ST-GTrend on three large-scale PV datasets, spanning a time period of 10 years. Our results show that ST-GTrend reduces Mean Absolute Percent Error (MAPE) and Euclidean Distances by 34.74% and 33.66% compared to the SOTA methods. Our results demonstrate that Para-GTrend can speed up ST-GTrend by up to 7.92 times. We further verify the generality and effectiveness of ST-GTrend for trend analysis using financial and economic datasets.
Several approaches to graphically representing context-specific relations among jointly distributed categorical variables have been proposed, along with structure learning algorithms. While existing optimization-based methods have limited scalability due to the large number of context-specific models, the constraint-based methods are more prone to error than even constraint-based directed acyclic graph learning algorithms since more relations must be tested. We present an algorithm for learning context-specific models that scales to hundreds of variables. Scalable learning is achieved through a combination of an order-based Markov chain Monte-Carlo search and a novel, context-specific sparsity assumption that is analogous to those typically invoked for directed acyclic graphical models. Unlike previous Markov chain Monte-Carlo search methods, our Markov chain is guaranteed to have the true posterior of the variable orderings as the stationary distribution. To implement the method, we solve a first case of an open problem recently posed by Alon and Balogh. Future work solving increasingly general instances of this problem would allow our methods to learn increasingly dense models. The method is shown to perform well on synthetic data and real world examples, in terms of both accuracy and scalability.
Graph invariant learning (GIL) has been an effective approach to discovering the invariant relationships between graph data and its labels for different graph learning tasks under various distribution shifts. Many recent endeavors of GIL focus on extracting the invariant subgraph from the input graph for prediction as a regularization strategy to improve the generalization performance of graph learning. Despite their success, such methods also have various limitations in obtaining their invariant subgraphs. In this paper, we provide in-depth analyses of the drawbacks of existing works and propose corresponding principles of our invariant subgraph extraction: 1) the sparsity, to filter out the variant features, 2) the softness, for a broader solution space, and 3) the differentiability, for a soundly end-to-end optimization. To meet these principles in one shot, we leverage the Optimal Transport (OT) theory and propose a novel graph attention mechanism called Graph Sinkhorn Attention (GSINA). This novel approach serves as a powerful regularization method for GIL tasks. By GSINA, we are able to obtain meaningful, differentiable invariant subgraphs with controllable sparsity and softness. Moreover, GSINA is a general graph learning framework that could handle GIL tasks of multiple data grain levels. Extensive experiments on both synthetic and real-world datasets validate the superiority of our GSINA, which outperforms the state-of-the-art GIL methods by large margins on both graph-level tasks and node-level tasks. Our code is publicly available at \url{https://github.com/dingfangyu/GSINA}.
Dynamic graph neural networks (DGNNs) are increasingly pervasive in exploiting spatio-temporal patterns on dynamic graphs. However, existing works fail to generalize under distribution shifts, which are common in real-world scenarios. As the generation of dynamic graphs is heavily influenced by latent environments, investigating their impacts on the out-of-distribution (OOD) generalization is critical. However, it remains unexplored with the following two major challenges: (1) How to properly model and infer the complex environments on dynamic graphs with distribution shifts? (2) How to discover invariant patterns given inferred spatio-temporal environments? To solve these challenges, we propose a novel Environment-Aware dynamic Graph LEarning (EAGLE) framework for OOD generalization by modeling complex coupled environments and exploiting spatio-temporal invariant patterns. Specifically, we first design the environment-aware EA-DGNN to model environments by multi-channel environments disentangling. Then, we propose an environment instantiation mechanism for environment diversification with inferred distributions. Finally, we discriminate spatio-temporal invariant patterns for out-of-distribution prediction by the invariant pattern recognition mechanism and perform fine-grained causal interventions node-wisely with a mixture of instantiated environment samples. Experiments on real-world and synthetic dynamic graph datasets demonstrate the superiority of our method against state-of-the-art baselines under distribution shifts. To the best of our knowledge, we are the first to study OOD generalization on dynamic graphs from the environment learning perspective.
Graph kernels used to be the dominant approach to feature engineering for structured data, which are superseded by modern GNNs as the former lacks learnability. Recently, a suite of Kernel Convolution Networks (KCNs) successfully revitalized graph kernels by introducing learnability, which convolves input with learnable hidden graphs using a certain graph kernel. The random walk kernel (RWK) has been used as the default kernel in many KCNs, gaining increasing attention. In this paper, we first revisit the RWK and its current usage in KCNs, revealing several shortcomings of the existing designs, and propose an improved graph kernel RWK+, by introducing color-matching random walks and deriving its efficient computation. We then propose RWK+CN, a KCN that uses RWK+ as the core kernel to learn descriptive graph features with an unsupervised objective, which can not be achieved by GNNs. Further, by unrolling RWK+, we discover its connection with a regular GCN layer, and propose a novel GNN layer RWK+Conv. In the first part of experiments, we demonstrate the descriptive learning ability of RWK+CN with the improved random walk kernel RWK+ on unsupervised pattern mining tasks; in the second part, we show the effectiveness of RWK+ for a variety of KCN architectures and supervised graph learning tasks, and demonstrate the expressiveness of RWK+Conv layer, especially on the graph-level tasks. RWK+ and RWK+Conv adapt to various real-world applications, including web applications such as bot detection in a web-scale Twitter social network, and community classification in Reddit social interaction networks.
Scalable graph neural networks (GNNs) have emerged as a promising technique, which exhibits superior predictive performance and high running efficiency across numerous large-scale graph-based web applications. However, (i) Most scalable GNNs tend to treat all nodes in graphs with the same propagation rules, neglecting their topological uniqueness; (ii) Existing node-wise propagation optimization strategies are insufficient on web-scale graphs with intricate topology, where a full portrayal of nodes' local properties is required. Intuitively, different nodes in web-scale graphs possess distinct topological roles, and therefore propagating them indiscriminately or neglect local contexts may compromise the quality of node representations. This intricate topology in web-scale graphs cannot be matched by small-scale scenarios. To address the above issues, we propose \textbf{A}daptive \textbf{T}opology-aware \textbf{P}ropagation (ATP), which reduces potential high-bias propagation and extracts structural patterns of each node in a scalable manner to improve running efficiency and predictive performance. Remarkably, ATP is crafted to be a plug-and-play node-wise propagation optimization strategy, allowing for offline execution independent of the graph learning process in a new perspective. Therefore, this approach can be seamlessly integrated into most scalable GNNs while remain orthogonal to existing node-wise propagation optimization strategies. Extensive experiments on 12 datasets, including the most representative large-scale ogbn-papers100M, have demonstrated the effectiveness of ATP. Specifically, ATP has proven to be efficient in improving the performance of prevalent scalable GNNs for semi-supervised node classification while addressing redundant computational costs.
Accounting for over 20% of the total carbon emissions, the precise estimation of on-road transportation carbon emissions is crucial for carbon emission monitoring and efficient mitigation policy formulation. However, existing estimation methods typically depend on hard-to-collect individual statistics of vehicle miles traveled to calculate emissions, thereby suffering from high data collection difficulty. To relieve this issue by utilizing the strong pattern recognition of artificial intelligence, we incorporate two sources of open data representative of the transportation demand and capacity factors, the origin-destination (OD) flow data and the road network data, to build a hierarchical heterogeneous graph learning method for on-road carbon emission estimation (HENCE). Specifically, a hierarchical graph consisting of the road network level, community level, and region level is constructed to model the multi-scale road network-based connectivity and travel connection between spatial areas. Heterogeneous graphs consisting of OD links and spatial links are further built at both the community level and region level to capture the intrinsic interactions between travel demand and road network accessibility. Extensive experiments on two large-scale real-world datasets demonstrate HENCE's effectiveness and superiority with R-squared exceeding 0.75 and outperforming baselines by 9.60% on average, validating its success in pioneering the use of artificial intelligence to empower carbon emission management and sustainability development. The implementation codes are available at this link: https://github.com/tsinghua-fib-lab/HENCE.
Graph transformers typically lack third-order interactions, limiting their geometric understanding which is crucial for tasks like molecular geometry prediction. We propose the Triplet Graph Transformer (TGT) that enables direct communication between pairs within a 3-tuple of nodes via novel triplet attention and aggregation mechanisms. TGT is applied to molecular property prediction by first predicting interatomic distances from 2D graphs and then using these distances for downstream tasks. A novel three-stage training procedure and stochastic inference further improve training efficiency and model performance. Our model achieves new state-of-the-art (SOTA) results on open challenge benchmarks PCQM4Mv2 and OC20 IS2RE. We also obtain SOTA results on QM9, MOLPCBA, and LIT-PCBA molecular property prediction benchmarks via transfer learning. We also demonstrate the generality of TGT with SOTA results on the traveling salesman problem (TSP).
Invariant models, one important class of geometric deep learning models, are capable of generating meaningful geometric representations by leveraging informative geometric features in point clouds. These models are characterized by their simplicity, good experimental results and computational efficiency. However, their theoretical expressive power still remains unclear, restricting a deeper understanding of the potential of such models. In this work, we concentrate on characterizing the theoretical expressiveness of a wide range of invariant models. We first rigorously bound the expressiveness of the most classic invariant model, message-passing neural networks incorporating distance (DisGNN), restricting its unidentifiable cases to be only highly symmetric point clouds. We then show that GeoNGNN, the geometric counterpart of one of the simplest subgraph graph neural networks (subgraph GNNs), can effectively break these corner cases' symmetry and thus achieve E(3)-completeness. By leveraging GeoNGNN as a theoretical tool, we further prove that: 1) most subgraph GNNs developed in traditional graph learning can be seamlessly extended to geometric scenarios with E(3)-completeness; 2) DimeNet, GemNet and SphereNet, three well-established invariant models, are also all capable of achieving E(3)-completeness. Our theoretical results fill the gap in the theoretical power of invariant models, contributing to a rigorous and comprehensive understanding of their capabilities. We also empirically evaluated GeoNGNN, the simplest model within the large E(3)-complete family we established, which achieves competitive results to models relying on high-order invariant/equivariant representations on molecule-relevant tasks.
With the arrival of the big data era, mobility profiling has become a viable method of utilizing enormous amounts of mobility data to create an intelligent transportation system. Mobility profiling can extract potential patterns in urban traffic from mobility data and is critical for a variety of traffic-related applications. However, due to the high level of complexity and the huge amount of data, mobility profiling faces huge challenges. Digital Twin (DT) technology paves the way for cost-effective and performance-optimised management by digitally creating a virtual representation of the network to simulate its behaviour. In order to capture the complex spatio-temporal features in traffic scenario, we construct alignment diagrams to assist in completing the spatio-temporal correlation representation and design dilated alignment convolution network (DACN) to learn the fine-grained correlations, i.e., spatio-temporal interactions. We propose a digital twin mobility profiling (DTMP) framework to learn node profiles on a mobility network DT model. Extensive experiments have been conducted upon three real-world datasets. Experimental results demonstrate the effectiveness of DTMP.
In this paper, we propose the first framework that enables solving graph learning tasks of all levels (node, edge and graph) and all types (generation, regression and classification) using one formulation. We first formulate prediction tasks including regression and classification into a generic (conditional) generation framework, which enables diffusion models to perform deterministic tasks with provable guarantees. We then propose Latent Graph Diffusion (LGD), a generative model that can generate node, edge, and graph-level features of all categories simultaneously. We achieve this goal by embedding the graph structures and features into a latent space leveraging a powerful encoder and decoder, then training a diffusion model in the latent space. LGD is also capable of conditional generation through a specifically designed cross-attention mechanism. Leveraging LGD and the ``all tasks as generation'' formulation, our framework is capable of solving graph tasks of various levels and types. We verify the effectiveness of our framework with extensive experiments, where our models achieve state-of-the-art or highly competitive results across a wide range of generation and regression tasks.
In Multi-Modal Knowledge Graphs (MMKGs), Multi-Modal Entity Alignment (MMEA) is crucial for identifying identical entities across diverse modal attributes. However, semantic inconsistency, mainly due to missing modal attributes, poses a significant challenge. Traditional approaches rely on attribute interpolation, but this often introduces modality noise, distorting the original semantics. Moreover, the lack of a universal theoretical framework limits advancements in achieving semantic consistency. This study introduces a novel approach, DESAlign, which addresses these issues by applying a theoretical framework based on Dirichlet energy to ensure semantic consistency. We discover that semantic inconsistency leads to model overfitting to modality noise, causing performance fluctuations, particularly when modalities are missing. DESAlign innovatively combats over-smoothing and interpolates absent semantics using existing modalities. Our approach includes a multi-modal knowledge graph learning strategy and a propagation technique that employs existing semantic features to compensate for missing ones, providing explicit Euler solutions. Comprehensive evaluations across 60 benchmark splits, including monolingual and bilingual scenarios, demonstrate that DESAlign surpasses existing methods, setting a new standard in performance. Further testing with high rates of missing modalities confirms its robustness, offering an effective solution to semantic inconsistency in real-world MMKGs.
Graph contrastive learning (GCL) has emerged as a state-of-the-art strategy for learning representations of diverse graphs including social and biomedical networks. GCL widely uses stochastic graph topology augmentation, such as uniform node dropping, to generate augmented graphs. However, such stochastic augmentations may severely damage the intrinsic properties of a graph and deteriorate the following representation learning process. We argue that incorporating an awareness of cohesive subgraphs during the graph augmentation and learning processes has the potential to enhance GCL performance. To this end, we propose a novel unified framework called CTAug, to seamlessly integrate cohesion awareness into various existing GCL mechanisms. In particular, CTAug comprises two specialized modules: topology augmentation enhancement and graph learning enhancement. The former module generates augmented graphs that carefully preserve cohesion properties, while the latter module bolsters the graph encoder's ability to discern subgraph patterns. Theoretical analysis shows that CTAug can strictly improve existing GCL mechanisms. Empirical experiments verify that CTAug can achieve state-of-the-art performance for graph representation learning, especially for graphs with high degrees. The code is available at https://doi.org/10.5281/zenodo.10594093, or https://github.com/wuyucheng2002/CTAug.
The rapidly changing landscape of technology and industries leads to dynamic skill requirements, making it crucial for employees and employers to anticipate such shifts to maintain a competitive edge in the labor market. Existing efforts in this area either rely on domain-expert knowledge or regarding skill evolution as a simplified time series forecasting problem. However, both approaches overlook the sophisticated relationships among different skills and the inner-connection between skill demand and supply variations. In this paper, we propose a Cross-view Hierarchical Graph learning Hypernetwork (CHGH) framework for joint skill demand-supply prediction. Specifically, CHGH is an encoder-decoder network consisting of i) a cross-view graph encoder to capture the interconnection between skill demand and supply, ii) a hierarchical graph encoder to model the co-evolution of skills from a cluster-wise perspective, and iii) a conditional hyper-decoder to jointly predict demand and supply variations by incorporating historical demand-supply gaps. Extensive experiments on three real-world datasets demonstrate the superiority of the proposed framework compared to seven baselines and the effectiveness of the three modules.
Despite remarkable success in diverse web-based applications, Graph Neural Networks(GNNs) inherit and further exacerbate historical discrimination and social stereotypes, which critically hinder their deployments in high-stake domains such as online clinical diagnosis, financial crediting, etc. However, current fairness research that primarily craft on i.i.d data, cannot be trivially replicated to non-i.i.d. graph structures with topological dependence among samples. Existing fair graph learning typically favors pairwise constraints to achieve fairness but fails to cast off dimensional limitations and generalize them into multiple sensitive attributes; besides, most studies focus on in-processing techniques to enforce and calibrate fairness, constructing a model-agnostic debiasing GNN framework at the pre-processing stage to prevent downstream misuses and improve training reliability is still largely under-explored. Furthermore, previous work on GNNs tend to enhance either fairness or privacy individually but few probe into their interplays. In this paper, we propose a novel model-agnostic debiasing framework named MAPPING (\underline{M}asking \underline{A}nd \underline{P}runing and Message-\underline{P}assing train\underline{ING}) for fair node classification, in which we adopt the distance covariance($dCov$)-based fairness constraints to simultaneously reduce feature and topology biases in arbitrary dimensions, and combine them with adversarial debiasing to confine the risks of attribute inference attacks. Experiments on real-world datasets with different GNN variants demonstrate the effectiveness and flexibility of MAPPING. Our results show that MAPPING can achieve better trade-offs between utility and fairness, and mitigate privacy risks of sensitive information leakage.
Graph condensation has emerged as an intriguing technique to save the expensive training costs of Graph Neural Networks (GNNs) by substituting a condensed small graph with the original graph. Despite the promising results achieved, previous methods usually employ an entangled paradigm of redundant parameters (nodes, edges, GNNs), which incurs complex joint optimization during condensation. This paradigm has considerably impeded the scalability of graph condensation, making it challenging to condense extremely large-scale graphs and generate high-fidelity condensed graphs. Therefore, we propose to disentangle the condensation process into a two-stage GNN-free paradigm, independently condensing nodes and generating edges while eliminating the need to optimize GNNs at the same time. The node condensation module avoids the complexity of GNNs by focusing on node feature alignment with anchors of the original graph, while the edge translation module constructs the edges of the condensed nodes by transferring the original structure knowledge with neighborhood anchors. This simple yet effective approach achieves at least 10 times faster than state-of-the-art methods with comparable accuracy on medium-scale graphs. Moreover, the proposed DisCo can successfully scale up to the Ogbn-papers100M graph containing over 100 million nodes with flexible reduction rates and improves performance on the second-largest Ogbn-products dataset by over 5%. Extensive downstream tasks and ablation study on five common datasets further demonstrate the effectiveness of the proposed DisCo framework. Our code is available at https://github.com/BangHonor/DisCo.