We introduce MANTRA, an annotated dataset of 4869 transient and 71207 non-transient object lightcurves built from the Catalina Real Time Transient Survey. We provide public access to this dataset as a plain text file to facilitate standardized quantitative comparison of astronomical transient event recognition algorithms. Some of the classes included in the dataset are: supernovae, cataclysmic variables, active galactic nuclei, high proper motion stars, blazars and flares. As an example of the tasks that can be performed on the dataset we experiment with multiple data pre-processing methods, feature selection techniques and popular machine learning algorithms (Support Vector Machines, Random Forests and Neural Networks). We assess quantitative performance in two classification tasks: binary (transient/non-transient) and eight-class classification. The best performing algorithm in both tasks is the Random Forest Classifier. It achieves an F1-score of 96.25% in the binary classification and 52.79% in the eight-class classification. For the eight-class classification, non-transients ( 96.83% ) is the class with the highest F1-score, while the lowest corresponds to high-proper-motion stars ( 16.79% ); for supernovae it achieves a value of 54.57% , close to the average across classes. The next release of MANTRA includes images and benchmarks with deep learning models.
Few-shot classification tends to struggle when it needs to adapt to diverse domains. Due to the non-overlapping label space between domains, the performance of conventional domain adaptation is limited. Previous work tackles the problem in a transductive manner, by assuming access to the full set of test data, which is too restrictive for many real-world applications. In this paper, we set out to tackle this issue by introducing a inductive framework, DaFeC, to improve Domain adaptation performance for Few-shot classification via Clustering. We first build a representation extractor to derive features for unlabeled data from the target domain (no test data is necessary) and then group them with a cluster miner. The generated pseudo-labeled data and the labeled source-domain data are used as supervision to update the parameters of the few-shot classifier. In order to derive high-quality pseudo labels, we propose a Clustering Promotion Mechanism, to learn better features for the target domain via Similarity Entropy Minimization and Adversarial Distribution Alignment, which are combined with a Cosine Annealing Strategy. Experiments are performed on the FewRel 2.0 dataset. Our approach outperforms previous work with absolute gains (in classification accuracy) of 4.95%, 9.55%, 3.99% and 11.62%, respectively, under four few-shot settings.
Attributed networks nowadays are ubiquitous in a myriad of high-impact applications, such as social network analysis, financial fraud detection, and drug discovery. As a central analytical task on attributed networks, node classification has received much attention in the research community. In real-world attributed networks, a large portion of node classes only contain limited labeled instances, rendering a long-tail node class distribution. Existing node classification algorithms are unequipped to handle the \textit{few-shot} node classes. As a remedy, few-shot learning has attracted a surge of attention in the research community. Yet, few-shot node classification remains a challenging problem as we need to address the following questions: (i) How to extract meta-knowledge from an attributed network for few-shot node classification? (ii) How to identify the informativeness of each labeled instance for building a robust and effective model? To answer these questions, in this paper, we propose a graph meta-learning framework -- Graph Prototypical Networks (GPN). By constructing a pool of semi-supervised node classification tasks to mimic the real test environment, GPN is able to perform \textit{meta-learning} on an attributed network and derive a highly generalizable model for handling the target classification task. Extensive experiments demonstrate the superior capability of GPN in few-shot node classification.
Most approaches in few-shot learning rely on costly annotated data related to the goal task domain during (pre-)training. Recently, unsupervised meta-learning methods have exchanged the annotation requirement for a reduction in few-shot classification performance. Simultaneously, in settings with realistic domain shift, common transfer learning has been shown to outperform supervised meta-learning. Building on these insights and on advances in self-supervised learning, we propose a transfer learning approach which constructs a metric embedding that clusters unlabeled prototypical samples and their augmentations closely together. This pre-trained embedding is a starting point for few-shot classification by summarizing class clusters and fine-tuning. We demonstrate that our self-supervised prototypical transfer learning approach ProtoTransfer outperforms state-of-the-art unsupervised meta-learning methods on few-shot tasks from the mini-ImageNet dataset. In few-shot experiments with domain shift, our approach even has comparable performance to supervised methods, but requires orders of magnitude fewer labels.
Few-shot classification aims to recognize unseen classes when presented with only a small number of samples. We consider the problem of multi-domain few-shot image classification, where unseen classes and examples come from diverse data sources. This problem has seen growing interest and has inspired the development of benchmarks such as Meta-Dataset. A key challenge in this multi-domain setting is to effectively integrate the feature representations from the diverse set of training domains. Here, we propose a Universal Representation Transformer (URT) layer, that meta-learns to leverage universal features for few-shot classification by dynamically re-weighting and composing the most appropriate domain-specific representations. In experiments, we show that URT sets a new state-of-the-art result on Meta-Dataset. Specifically, it achieves top-performance on the highest number of data sources compared to competing methods. We analyze variants of URT and present a visualization of the attention score heatmaps that sheds light on how the model performs cross-domain generalization. Our code is available at https://github.com/liulu112601/URT.
Classical and some deep learning techniques for Arabic text classification often depend on complex morphological analysis, word segmentation, and hand-crafted feature engineering. These could be eliminated by using character-level features. We propose a novel end-to-end Arabic document classification framework, Arabic document image-based classifier (AraDIC), inspired by the work on image-based character embeddings. AraDIC consists of an image-based character encoder and a classifier. They are trained in an end-to-end fashion using the class balanced loss to deal with the long-tailed data distribution problem. To evaluate the effectiveness of AraDIC, we created and published two datasets, the Arabic Wikipedia title (AWT) dataset and the Arabic poetry (AraP) dataset. To the best of our knowledge, this is the first image-based character embedding framework addressing the problem of Arabic text classification. We also present the first deep learning-based text classifier widely evaluated on modern standard Arabic, colloquial Arabic and classical Arabic. AraDIC shows performance improvement over classical and deep learning baselines by 12.29% and 23.05% for the micro and macro F-score, respectively.
Deep clustering against self-supervised learning is a very important and promising direction for unsupervised visual representation learning since it requires little domain knowledge to design pretext tasks. However, the key component, embedding clustering, limits its extension to the extremely large-scale dataset due to its prerequisite to save the global latent embedding of the entire dataset. In this work, we aim to make this framework more simple and elegant without performance decline. We propose an unsupervised image classification framework without using embedding clustering, which is very similar to standard supervised training manner. For detailed interpretation, we further analyze its relation with deep clustering and contrastive learning. Extensive experiments on ImageNet dataset have been conducted to prove the effectiveness of our method. Furthermore, the experiments on transfer learning benchmarks have verified its generalization to other downstream tasks, including multi-label image classification, object detection, semantic segmentation and few-shot image classification.
Most supervised learning models are trained for full automation. However, their predictions are sometimes worse than those by human experts on some specific instances. Motivated by this empirical observation, our goal is to design classifiers that are optimized to operate under different automation levels. More specifically, we focus on convex margin-based classifiers and first show that the problem is NP-hard. Then, we further show that, for support vector machines, the corresponding objective function can be expressed as the difference of two functions f = g - c, where g is monotone, non-negative and {\gamma}-weakly submodular, and c is non-negative and modular. This representation allows a recently introduced deterministic greedy algorithm, as well as a more efficient randomized variant of the algorithm, to enjoy approximation guarantees at solving the problem. Experiments on synthetic and real-world data from several applications in medical diagnosis illustrate our theoretical findings and demonstrate that, under human assistance, supervised learning models trained to operate under different automation levels can outperform those trained for full automation as well as humans operating alone.
Instance level detection of thoracic diseases or abnormalities are crucial for automatic diagnosis in chest X-ray images. Most existing works on chest X-rays focus on disease classification and weakly supervised localization. In order to push forward the research on disease classification and localization on chest X-rays. We provide a new benchmark called ChestX-Det10, including box-level annotations of 10 categories of disease/abnormality of $\sim$ 3,500 images. The annotations are located at https://github.com/Deepwise-AILab/ChestX-Det10-Dataset.
Recently, graph neural networks for semi-supervised classification have been widely studied. However, existing methods only use the information of limited neighbors and do not deal with the inter-class connections in graphs. In this paper, we propose Adaptive aggregation with Class-Attentive Diffusion (AdaCAD), a new aggregation scheme that adaptively aggregates nodes probably of the same class among K-hop neighbors. To this end, we first propose a novel stochastic process, called Class-Attentive Diffusion (CAD), that strengthens attention to intra-class nodes and attenuates attention to inter-class nodes. In contrast to the existing diffusion methods with a transition matrix determined solely by the graph structure, CAD considers both the node features and the graph structure with the design of our class-attentive transition matrix that utilizes a classifier. Then, we further propose an adaptive update scheme that leverages different reflection ratios of the diffusion result for each node depending on the local class-context. As the main advantage, AdaCAD alleviates the problem of undesired mixing of inter-class features caused by discrepancies between node labels and the graph topology. Built on AdaCAD, we construct a simple model called Class-Attentive Diffusion Network (CAD-Net). Extensive experiments on seven benchmark datasets consistently demonstrate the efficacy of the proposed method and our CAD-Net significantly outperforms the state-of-the-art methods. Code is available at https://github.com/ljin0429/CAD-Net.
In the recent years, researchers proposed a number of successful methods to perform out-of-distribution (OOD) detection in deep neural networks (DNNs). So far the scope of the highly accurate methods has been limited to image level classification tasks. However, attempts for generally applicable methods beyond classification did not attain similar performance. In this paper, we address this limitation by proposing a simple yet effective task-agnostic OOD detection method. We estimate the probability density functions (pdfs) of intermediate features of a pre-trained DNN by performing kernel density estimation (KDE) on the training dataset. As direct application of KDE to feature maps is hindered by their high dimensionality, we use a set of lower-dimensional marginalized KDE models instead of a single high-dimensional one. At test time, we evaluate the pdfs on a test sample and produce a confidence score that indicates the sample is OOD. The use of KDE eliminates the need for making simplifying assumptions about the underlying feature pdfs and makes the proposed method task-agnostic. We perform extensive experiments on classification tasks using benchmark datasets for OOD detection. Additionally, we perform experiments on medical image segmentation tasks using brain MRI datasets. The results demonstrate that the proposed method consistently achieves high OOD detection performance in both classification and segmentation tasks and improves state-of-the-art in almost all cases. Code is available at \url{https://github.com/eerdil/task_agnostic_ood}
Feature attribution (FA), or the assignment of class-relevance to different locations in an image, is important for many classification problems but is particularly crucial within the neuroscience domain, where accurate mechanistic models of behaviours, or disease, require knowledge of all features discriminative of a trait. At the same time, predicting class relevance from brain images is challenging as phenotypes are typically heterogeneous, and changes occur against a background of significant natural variation. Here, we present a novel framework for creating class specific FA maps through image-to-image translation. We propose the use of a VAE-GAN to explicitly disentangle class relevance from background features for improved interpretability properties, which results in meaningful FA maps. We validate our method on 2D and 3D brain image datasets of dementia (ADNI dataset), ageing (UK Biobank), and (simulated) lesion detection. We show that FA maps generated by our method outperform baseline FA methods when validated against ground truth. More significantly, our approach is the first to use latent space sampling to support exploration of phenotype variation. Our code will be available online at https://github.com/CherBass/ICAM.
Automated machine learning (AutoML) and deep learning (DL) are two cutting-edge paradigms used to solve a myriad of inductive learning tasks. In spite of their successes, little guidance exists for when to choose one approach over the other in the context of specific real-world problems. Furthermore, relatively few tools exist that allow the integration of both AutoML and DL in the same analysis to yield results combining both of their strengths. Here, we seek to address both of these issues, by (1.) providing a head-to-head comparison of AutoML and DL in the context of binary classification on 6 well-characterized public datasets, and (2.) evaluating a new tool for genetic programming-based AutoML that incorporates deep estimators. Our observations suggest that AutoML outperforms simple DL classifiers when trained on similar datasets for binary classification but integrating DL into AutoML improves classification performance even further. However, the substantial time needed to train AutoML+DL pipelines will likely outweigh performance advantages in many applications.
While much work on deep latent variable models of text uses continuous latent variables, discrete latent variables are interesting because they are more interpretable and typically more space efficient. We consider several approaches to learning discrete latent variable models for text in the case where exact marginalization over these variables is intractable. We compare the performance of the learned representations as features for low-resource document and sentence classification. Our best models outperform the previous best reported results with continuous representations in these low-resource settings, while learning significantly more compressed representations. Interestingly, we find that an amortized variant of Hard EM performs particularly well in the lowest-resource regimes.
We study the black-box attacks on graph neural networks (GNNs) under a novel and realistic constraint: attackers have access to only a subset of nodes in the network, and they can only attack a small number of them. A node selection step is essential under this setup. We demonstrate that the structural inductive biases of GNN models can be an effective source for this type of attacks. Specifically, by exploiting the connection between the backward propagation of GNNs and random walks, we show that the common gradient-based white-box attacks can be generalized to the black-box setting via the connection between the gradient and an importance score similar to PageRank. In practice, we find attacks based on this importance score indeed increase the classification loss by a large margin, but they fail to significantly increase the mis-classification rate. Our theoretical and empirical analyses suggest that there is a discrepancy between the loss and mis-classification rate, as the latter presents a diminishing-return pattern when the number of attacked nodes increases. Therefore, we propose a greedy procedure to correct the importance score that takes into account of the diminishing-return pattern. Experimental results show that the proposed procedure can significantly increase the mis-classification rate of common GNNs on real-world data without access to model parameters nor predictions.
Deep neural networks and other sophisticated machine learning models are widely applied to biomedical signal data because they can detect complex patterns and compute accurate predictions. However, the difficulty of interpreting such models is a limitation, especially for applications involving high-stakes decision, including the identification of bacterial infections. In this paper, we consider fast Raman spectroscopy data and demonstrate that a logistic regression model with carefully selected features achieves accuracy comparable to that of neural networks, while being much simpler and more transparent. Our analysis leverages wavelet features with intuitive chemical interpretations, and performs controlled variable selection with knockoffs to ensure the predictors are relevant and non-redundant. Although we focus on a particular data set, the proposed approach is broadly applicable to other types of signal data for which interpretability may be important.
Previous Online Knowledge Distillation (OKD) often carries out mutually exchanging probability distributions, but neglects the useful representational knowledge. We therefore propose Multi-view Contrastive Learning (MCL) for OKD to implicitly capture correlations of feature embeddings encoded by multiple peer networks, which provide various views for understanding the input data instances. Benefiting from MCL, we can learn a more discriminative representation space for classification than previous OKD methods. Experimental results on image classification demonstrate that our MCL-OKD outperforms other state-of-the-art OKD methods by large margins without sacrificing additional inference cost. Codes are available at https://github.com/winycg/MCL-OKD.
Deep learning models have been successfully deployed for a diverse array of image-based plant phenotyping applications including disease detection and classification. However, successful deployment of supervised deep learning models requires large amount of labeled data, which is a significant challenge in plant science (and most biological) domains due to the inherent complexity. Specifically, data annotation is costly, laborious, time consuming and needs domain expertise for phenotyping tasks, especially for diseases. To overcome this challenge, active learning algorithms have been proposed that reduce the amount of labeling needed by deep learning models to achieve good predictive performance. Active learning methods adaptively select samples to annotate using an acquisition function to achieve maximum (classification) performance under a fixed labeling budget. We report the performance of four different active learning methods, (1) Deep Bayesian Active Learning (DBAL), (2) Entropy, (3) Least Confidence, and (4) Coreset, with conventional random sampling-based annotation for two different image-based classification datasets. The first image dataset consists of soybean [Glycine max L. (Merr.)] leaves belonging to eight different soybean stresses and a healthy class, and the second consists of nine different weed species from the field. For a fixed labeling budget, we observed that the classification performance of deep learning models with active learning-based acquisition strategies is better than random sampling-based acquisition for both datasets. The integration of active learning strategies for data annotation can help mitigate labelling challenges in the plant sciences applications particularly where deep domain knowledge is required.
Conformal inference, cross-validation+, and the jackknife+ are hold-out methods that can be combined with virtually any machine learning algorithm to construct prediction sets with guaranteed marginal coverage. In this paper, we develop specialized versions of these techniques for categorical and unordered response labels that, in addition to providing marginal coverage, are also fully adaptive to complex data distributions, in the sense that they perform favorably in terms of approximate conditional coverage compared to alternative methods. The heart of our contribution is a novel conformity score, which we explicitly demonstrate to be powerful and intuitive for classification problems, but whose underlying principle is potentially far more general. Experiments on synthetic and real data demonstrate the practical value of our theoretical guarantees, as well as the statistical advantages of the proposed methods over the existing alternatives.
Recent few-shot learning works focus on training a model with prior meta-knowledge to fast adapt to new tasks with unseen classes and samples. However, conventional time-series classification algorithms fail to tackle the few-shot scenario. Existing few-shot learning methods are proposed to tackle image or text data, and most of them are neural-based models that lack interpretability. This paper proposes an interpretable neural-based framework, namely \textit{Dual Prototypical Shapelet Networks (DPSN)} for few-shot time-series classification, which not only trains a neural network-based model but also interprets the model from dual granularity: 1) global overview using representative time series samples, and 2) local highlights using discriminative shapelets. In particular, the generated dual prototypical shapelets consist of representative samples that can mostly demonstrate the overall shapes of all samples in the class and discriminative partial-length shapelets that can be used to distinguish different classes. We have derived 18 few-shot TSC datasets from public benchmark datasets and evaluated the proposed method by comparing with baselines. The DPSN framework outperforms state-of-the-art time-series classification methods, especially when training with limited amounts of data. Several case studies have been given to demonstrate the interpret ability of our model.